Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2172 ATGGACCCCAATATTTCTGAATTTACAGATACTGTTGCTATAAATGGAAATTTTGAAAATGTTGTGCAGTTGGATATTACTGCTACTAATGACTCATCTGTGGGAGAAATCAAAGAAGGACAAATTGACAATGTGGACAGCAACAATGTGACCATTTCTAAGGAGGAGGAGGAGGAGAAAATCACTGATCAAACAAAACATTCAAGAGCATCAAAAGTTCCAATCAAGAATAAGAATGCGAAGCCCCCAAGCCCTAAAGGCATTCATGTTAGTGGGCTGAAAAAATGCAAAGATGGAAAAGATGAAGAGGCACCATCTGCTGTTCCAAATGGTACTCTAGCCTCAAACACTCGCACAAGACAACCTGTTAAAAGTAGATCATCCAGTGAGAAGCAGACTCAAATGTCCAAGCACTCTGGAAAGTCTGATGCAGCATCTTCTGAAGCACCCATGGTGAAGAAAATACCAAAACCATTGAAGAAAGAACCCCTTGATGATGCTGAAGGAGAAGCAGAATCTTCTTTAGGTACCATTGCAGAAGATGCCAAACCTCGTAGGGTGGGAATGCTTCCTAATTATGGATTTAGTTTCAGGTGTGATGAACGAGCTGAGAGAAGAAAAGAGTTCTACTCAAAGCTTGAGGAAAAAATTCATGCAAAGGAAGTGGAAAAGAGTAACTTGCAAGCAAAGACAAAGGAGACTCAAGAAGCTGAGATCAAGATGCTTAGGAAGAGTCTAGCATTTAAGGCAACTCCAATGCCAAGTTTCTACCAGGAGCCACCTCCTCCTAAGGTGGAGTTAAAGAAGATACCAACTACAAGAGCAAAATCTCCCAAGCTTGGTCGAAGGAAGAGTTCAATCAATTCAGAGTCAGAAGGAAATGTTGGCAGCAATGGTCAACAATGTCGTTTAAGTCTAGATGAAAAGGTGTCTCAGAATAAAGCTGTTACACCTGTACATCCAAAGAAGCCACAGAGGAGATCTCTCCCTCCTCGACTGCATTCTGAAAGGACTAGTTCATCCAATTCAAAAACTTCAGGCACTTCATCTAAGGCAATGAATGGTGGAAAGACCTCTTCACCTAGTGTAATGAACAGAGATTGCACCTTGTCCAGTGCTACCGGGGAAGGGAAAACTGAGATTGCTGCAGCCAATGAAGAGAAGAGTACCTTGTCCAGTGAGATGGGTGAAGCTTCACCACACATGAAGGAGCCCAGTGAAGCAGAGTCTCGTGTGAACGGTGACATAGTGGTCGAAGAGCAGCCTCAGCTTTCAGTGCAAGAACCCATAGTGGCAGAACATTAA 1305 0.4284 MDPNISEFTDTVAINGNFENVVQLDITATNDSSVGEIKEGQIDNVDSNNVTISKEEEEEKITDQTKHSRASKVPIKNKNAKPPSPKGIHVSGLKKCKDGKDEEAPSAVPNGTLASNTRTRQPVKSRSSSEKQTQMSKHSGKSDAASSEAPMVKKIPKPLKKEPLDDAEGEAESSLGTIAEDAKPRRVGMLPNYGFSFRCDERAERRKEFYSKLEEKIHAKEVEKSNLQAKTKETQEAEIKMLRKSLAFKATPMPSFYQEPPPPKVELKKIPTTRAKSPKLGRRKSSINSESEGNVGSNGQQCRLSLDEKVSQNKAVTPVHPKKPQRRSLPPRLHSERTSSSNSKTSGTSSKAMNGGKTSSPSVMNRDCTLSSATGEGKTEIAAANEEKSTLSSEMGEASPHMKEPSEAESRVNGDIVVEEQPQLSVQEPIVAEH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2172 434 MobiDBLite consensus disorder prediction 154 168 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 334 378 - -
Dere05g2172 434 Pfam Targeting protein for Xklp2 (TPX2) domain 195 265 IPR027329 -
Dere05g2172 434 Coils Coil 210 230 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 282 312 - -
Dere05g2172 434 PANTHER PROTEIN WVD2-LIKE 4 60 367 IPR044833 GO:0008017
Dere05g2172 434 MobiDBLite consensus disorder prediction 109 143 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 48 179 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 400 414 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 50 70 - -
Dere05g2172 434 MobiDBLite consensus disorder prediction 252 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2172 Dere-ChrDere05 31861169 31864439 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2172 05 31861169 31864439 Dere04g0556 04 5590324 5593703 CCT
Dere05g2172 05 31861169 31864439 Dere05g2172 05 31861169 31864439 ECH