Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2170 ATGTCAGAGGTCCTCGGCTTTACTGGAGGTGATGATTTTTGCCCTGGGGGGTCAATATACGCTAATCCCAAGGAACCAAATCTCTTATTGTCTCTTGGCCGTCATGTTGATGTTTACTTTCCTCCTCAGAAGAGATCACGTATCAGTGCTCCATTGAAGAGATCAAACATCAGTGCTCCATTTCTCTTTAGTGGAGAATGGTTTGAGGCTGAGGAGAAGCAGCAAACATCTATTGAAGTTTTGCCAGATGAATGTCTCTTTGAGATCTTTAGAAGGTTGCCTGGAGGCCGAGAGAGGGGCTCATGTGCTTGTGTTTCTAAGCGCTGGCTTATGCTTCTAAGCAATATTTGCAAGGATGAGTTCTGCAGCAACAAAACCACCGGTCACGGGAATGATGTTGGTGGAGAGGAGGCTGATGACAGGGAATTTGGGGGTGACGGATACCTCTCTCGGGATTTGGAAGGAAAGAAGGCATCAGATGTTAGACTTGCTGCCATGGCTGTTGGGACTGTCTCTCGTGGTGGATTGGGAAAGCTATCAATCCGTGGAAACAATTCAGGTTGCAGGGTGACTAATCTTGGTCTCAAGGCGGTTGCCCACGGGTGCCCTTCATTAAAGGCTCTCTCTCTTTGGAATGTTACTACCATAGATGATGAAGGCCTAATTGAGATTGCTAGTGGTTGTCCCAAGTTAATGAAGCTTGACCTTTACAATTGTCCCAGAATTTCTAATAAGGCTTTGATTGCCATTGCAAAGAACTGCCCCAAACTGACTGAGTTATCAATTGAATCATGTCCTAGAATTGGCAATGAAGGTCTACAAGCTATTGGGCAGTATAGCTCTAATATAAGGTCCTTATCAATCAAGGATTGCACCTCTGTTGGTGACCAGGGAATTGCTAGCCTGTTTTCTTCCGCCTCTTTTGTTCTGACAAAGGTGAAGCTTGAGGCACTGACTATTTCTGATCTCTCTTTGGCTGTTATTGGACATTATGGCAAGGCAGTTACAGATCTTGTCCTTAAATGCCTCCCTAATGTTAGTGAGAGAGGTTTCTGGGTCATGGGGAATGGCCATGGGTTGCAGAAGCTAAAGTCACTCTCAATTGCATCCTGCCAAGGAGTAACAGATATTGGGCTTGATGCTGTTGGAAAGGGTTGCCCCAATCTCAAACACTTTCATCTCCGTAAAAGTGCATTTTTATCAGACAATGGGTTGGCTTCGTTTGCCAAAGTTGCTTTATCACTTGAGAGCCTACAGTTGGAGGAGTGCCACAGGATCACCCAATTTGGGTTTTTTGGTGTCCTTTTCAACTGTGGTGCTAAATTGAAGGCTCTTGCACTGGTTAGCTGCTTTGGGATTAAAGATATGAATTTGGTATTGCCTTCTGTATTGCCTTGCCAATCACTGCAGTCTTTATCAATTCGTAACTGTCCTGGATTTGGAAATGCTACCATGGCCTTACTGGGAAAGCTTTGCCCTCAGCTGCAGCATGTTGAATTGAGTGGACTTGAAGGAGTGACTGACGCTGGGTTTCTCCCTATGCTTTTGAGCTCTGAGGCTGGTCTGGTTAAAGTAAATCTTAGTGGTTGCATAAATTTGACGGATCATGTAGTTTCCTCCGTGGCAAATCTGCATGGTTTGACACTTGAGGTGTTAAATCTTAATGGTTGTAAAAAGATCAATGATGTTAGCTTGATAGCAATTGCAGAAAATTGCCCATTGCTCCGTGATCTTGATGTTTCCCAGTGTGCAATTACTGATGCAGGGGTTACAGCCCTGGCACGTGCAAACCTGTTCCATTTGCAGATCCTTTCCTTGTCAGGTTGCTCTATGGTTTCAACTAAGAGCCTGCCTGCTTTGAGAAATTTGGGCGAGACTCTTTTGGGATTGAATCTTCTGAACTGCAATGCAATCAGCAGCCGCTCAGTTGGCAAGCTTGTGGAACAACTCTGGAGGTGTGACATCCTCGCTTGA 1974 0.4504 MSEVLGFTGGDDFCPGGSIYANPKEPNLLLSLGRHVDVYFPPQKRSRISAPLKRSNISAPFLFSGEWFEAEEKQQTSIEVLPDECLFEIFRRLPGGRERGSCACVSKRWLMLLSNICKDEFCSNKTTGHGNDVGGEEADDREFGGDGYLSRDLEGKKASDVRLAAMAVGTVSRGGLGKLSIRGNNSGCRVTNLGLKAVAHGCPSLKALSLWNVTTIDDEGLIEIASGCPKLMKLDLYNCPRISNKALIAIAKNCPKLTELSIESCPRIGNEGLQAIGQYSSNIRSLSIKDCTSVGDQGIASLFSSASFVLTKVKLEALTISDLSLAVIGHYGKAVTDLVLKCLPNVSERGFWVMGNGHGLQKLKSLSIASCQGVTDIGLDAVGKGCPNLKHFHLRKSAFLSDNGLASFAKVALSLESLQLEECHRITQFGFFGVLFNCGAKLKALALVSCFGIKDMNLVLPSVLPCQSLQSLSIRNCPGFGNATMALLGKLCPQLQHVELSGLEGVTDAGFLPMLLSSEAGLVKVNLSGCINLTDHVVSSVANLHGLTLEVLNLNGCKKINDVSLIAIAENCPLLRDLDVSQCAITDAGVTALARANLFHLQILSLSGCSMVSTKSLPALRNLGETLLGLNLLNCNAISSRSVGKLVEQLWRCDILA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2170 657 Pfam Leucine Rich repeat 361 381 IPR001611 GO:0005515
Dere05g2170 657 Pfam Leucine Rich repeat 572 594 IPR001611 GO:0005515
Dere05g2170 657 Pfam Leucine Rich repeat 280 302 IPR001611 GO:0005515
Dere05g2170 657 Pfam Leucine Rich repeat 253 276 IPR001611 GO:0005515
Dere05g2170 657 Pfam Leucine Rich repeat 548 569 IPR001611 GO:0005515
Dere05g2170 657 Gene3D - 70 122 - -
Dere05g2170 657 FunFam EIN3-binding F-box protein 1 267 457 - -
Dere05g2170 657 Gene3D Ribonuclease Inhibitor 517 579 IPR032675 -
Dere05g2170 657 Gene3D Ribonuclease Inhibitor 580 655 IPR032675 -
Dere05g2170 657 Gene3D Ribonuclease Inhibitor 461 516 IPR032675 -
Dere05g2170 657 SMART LRR_CC_2 386 411 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 360 385 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 598 623 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 492 517 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 202 227 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 228 253 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 572 596 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 519 544 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 546 571 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 280 305 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 466 491 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 412 437 IPR006553 -
Dere05g2170 657 SMART LRR_CC_2 254 279 IPR006553 -
Dere05g2170 657 Gene3D Ribonuclease Inhibitor 175 266 IPR032675 -
Dere05g2170 657 Gene3D Ribonuclease Inhibitor 267 460 IPR032675 -
Dere05g2170 657 SUPERFAMILY RNI-like 186 430 - -
Dere05g2170 657 SMART fbox_2 81 122 IPR001810 GO:0005515
Dere05g2170 657 SUPERFAMILY F-box domain 72 115 IPR036047 GO:0005515
Dere05g2170 657 Pfam F-box-like 79 112 IPR001810 GO:0005515
Dere05g2170 657 PANTHER UNCHARACTERIZED 361 535 - -
Dere05g2170 657 CDD F-box_AtTIR1-like 78 112 - -
Dere05g2170 657 FunFam EIN3-binding F-box protein 1 71 120 - -
Dere05g2170 657 FunFam EIN3-binding F-box protein 1 148 266 - -
Dere05g2170 657 FunFam EIN3-binding F-box protein 1 518 655 - -
Dere05g2170 657 SUPERFAMILY RNI-like 322 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2170 Dere-ChrDere05 31855905 31858518 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2170 05 31855905 31858518 Dere04g0558 04 5597068 5599751 CCT
Dere05g2170 05 31855905 31858518 Dere05g2170 05 31855905 31858518 ECH