Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0558 ATGTCCAAAGTCATCGGCTTCACCGGAGGTGACGATTTTTGCCCCAGGGGATCAATATACACTAATCCCAAGGAATCTAATCTCTTATTGTCTCTTGGCAACCATGTCGATGTTTACTTTCCTCCTCGGAAGAGATCTCGCATCACTGCTCCATTTGTTTTCGACGGAGAATGGTTTGAGCAGAAGCAGAAGACATCTATTGAAGCCTTGCCAGATGAATGCCTCTTTGAGATCTTTAGAAGGTTGCCTGTAGGCCAAGAAAGGAGTGCATGTGCTTGTGTTTCCAAGCGCTGGCTTATGCTTCTTAGCAGCATTTGTAAGGATGAAATCTGCAGCAACAAAGTTACCAGACATGAGAACAAGTTTAGTGAAAAGAAGGCTGATGATCTGGAATTTGGGGGTGATGGATACCTGTCTCGGAGCTTGGTAGGTAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGTACTGCTTCTCGTGGAGGTCTGGGAAAACTTTCAATCCATGGGAGCAATTCAGATCGTGGAGTGACCAATCTAGGTCTCAAGTCAGTTGCCCAGGGATGCCCTTCTTTGAAGGGGCTATCACTATGGGATATTTCTACAATTGGTGATGAAGGCCTAATTGAGATTGCAAGTGGATGTCATCATTTAGAGAAGCTTGACCTTTGTAAGTGCCCCATGATTTCTAACAAGGCTTTAATTGCTATTGCAAAGAACTGCCCAAACCTGACTGAGTTATCCATAGAATCATGTCCTAAAATTGGTAATGAAGGCTTACAAGCTATTGGGCAGTTATGCCCCAATCTGAGGTCTATATCAATCAGGGACTGCACCAGTGTTGGTGATCAGGGAATTTCTAGCCTGTTTTCTTCACGGTCTTTTGATCTGACAAAGGTGAAGCTTCAGGCACTGGCTATTTCTGACCTCTCTCTTGCTGTCATTGGACATTATGGAAAGGCAGTTACTGATCTTGTACTGACTTGCCTCCCAAATGTAAGCGAGAGGGGGTTCTGGGTCATGGGTAACGGTCATGGGTTGCAGAAGCTAAAGTCACTAACAATTGCATCTTGCCAGGGAGTTACAGATATTGGACTTGAATCTCTAGGGAAGGGCTGTCCAAATCTTAAACACTTCCACCTTCGTAAATGTGCATTTCTGTCAGACAATGGATTGCTATCATTTGCCAAAGCTGCTCTATCACTTGAGAGCCTTCAATTGGAGGAGTGCCACAGGATCACCCAATTTGGGTTTTTTGGTGTTATTATTAACTGCGGTGCCAAATTGAAGGCTTTTGCTCTGGTTAGCTGCTTCGGATTCAAAGATCTGAATTTGAGATTGCCTCAGGTGTCTCCTTGCAAGTCACTGCAGTCACTAACAATCCGTAACTGCCCTGGATTTGGTAATACTTCCTTGGCTGTACTAGCAAAATTATGCCCTCAGCTCCTGCATGTTGAATTAAGTGGCCTTGAGTCAGTAACAGATGCTGGGTTACTTCCACTGATTGAAAACTCTGAGGCTGGTCTGGTTAAGGTTAATCTTAGTGGTTGCATAAATCTGACAGACAAAGTAATTTCATCATTGGCCAGTTTGCATGGTTGGACTCTTGAGATGCTTAGCCTTGATGGCTGTAAAAAGATCAGTGATGCTAGCTTGATAGCAATTGCAGGAAATTGTCCATTGCTCTCCGATCTTGATGTTTCCAAGTGTGCAATCACTGATGCTGGAATTGCAGCCCTGGCCAGTGCAGACCAGCTCAATTTGCAGATCCTTTCTTTGTCAGGTTGCGTTTTGGTTTCAGATAAGGGCCTGTCTGCTCTGACAAAATTGGGCCGGACCCTTTTGGGATTAAACATCCAGCACTGCAGTGCAATCAGCAGCAGATCCGTTGACATGCTTCTGGAACTTCTCTGGAGGTGTGACATCCTCTTCTGA 1941 0.4477 MSKVIGFTGGDDFCPRGSIYTNPKESNLLLSLGNHVDVYFPPRKRSRITAPFVFDGEWFEQKQKTSIEALPDECLFEIFRRLPVGQERSACACVSKRWLMLLSSICKDEICSNKVTRHENKFSEKKADDLEFGGDGYLSRSLVGKKATDVRLAAIAVGTASRGGLGKLSIHGSNSDRGVTNLGLKSVAQGCPSLKGLSLWDISTIGDEGLIEIASGCHHLEKLDLCKCPMISNKALIAIAKNCPNLTELSIESCPKIGNEGLQAIGQLCPNLRSISIRDCTSVGDQGISSLFSSRSFDLTKVKLQALAISDLSLAVIGHYGKAVTDLVLTCLPNVSERGFWVMGNGHGLQKLKSLTIASCQGVTDIGLESLGKGCPNLKHFHLRKCAFLSDNGLLSFAKAALSLESLQLEECHRITQFGFFGVIINCGAKLKAFALVSCFGFKDLNLRLPQVSPCKSLQSLTIRNCPGFGNTSLAVLAKLCPQLLHVELSGLESVTDAGLLPLIENSEAGLVKVNLSGCINLTDKVISSLASLHGWTLEMLSLDGCKKISDASLIAIAGNCPLLSDLDVSKCAITDAGIAALASADQLNLQILSLSGCVLVSDKGLSALTKLGRTLLGLNIQHCSAISSRSVDMLLELLWRCDILF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0558 646 FunFam EIN3-binding F-box protein 1 449 646 - -
Dere04g0558 646 CDD F-box_AtTIR1-like 67 104 - -
Dere04g0558 646 Gene3D - 60 111 - -
Dere04g0558 646 Gene3D Ribonuclease Inhibitor 446 645 IPR032675 -
Dere04g0558 646 FunFam EIN3-binding F-box protein 1 256 446 - -
Dere04g0558 646 Pfam F-box domain 70 107 IPR001810 GO:0005515
Dere04g0558 646 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Dere04g0558 646 Gene3D Ribonuclease Inhibitor 244 445 IPR032675 -
Dere04g0558 646 SMART LRR_CC_2 401 426 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 508 533 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 587 612 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 455 480 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 269 294 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 243 268 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 375 400 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 561 585 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 349 374 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 217 242 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 191 216 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 481 506 IPR006553 -
Dere04g0558 646 SMART LRR_CC_2 535 560 IPR006553 -
Dere04g0558 646 FunFam EIN3-binding F-box protein 1 60 109 - -
Dere04g0558 646 SMART fbox_2 70 111 IPR001810 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 589 609 IPR001611 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 269 292 IPR001611 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 561 583 IPR001611 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 375 398 IPR001611 GO:0005515
Dere04g0558 646 Pfam Leucine Rich repeat 242 265 IPR001611 GO:0005515
Dere04g0558 646 FunFam EIN3-binding F-box protein 1 137 255 - -
Dere04g0558 646 SUPERFAMILY RNI-like 179 643 - -
Dere04g0558 646 Gene3D Ribonuclease Inhibitor 165 243 IPR032675 -
Dere04g0558 646 PANTHER UNCHARACTERIZED 349 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0558 Dere-ChrDere04 5597068 5599751 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2170 05 31855905 31858518 Dere04g0558 04 5597068 5599751 CCT
Dere04g0558 04 5597068 5599751 Dere04g0558 04 5597068 5599751 ECH