Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2155 ATGGGTGGGAAGGGACTTCAGCTATTTGATGACAAAAGAGATGGATTGTTCTCTGTCTGCGATTTGGGGTCTCAGTGGAATCGGCAAGACGGGTACTATTATCCCGGAGGCTTATTTGCCAGTGTCGGTCAGGTGGGAATGGGATTTGGTATTCAGCCGCAACCGCAACCGCAACCGAACCCTTCGGATTCCCGGGACAGTGGCGGCGTGAAATTTCCCTATGCTGAAGTGTTCGTCAAATATGTGGAATCAAAGGGGAAAGTTCTGACTGCTGGAGTTTGGGAGGAGGAAGAACTTCAGAGCAAGAAGAAGGGTGGCCTTGAACTGAAAATTAAGATAAACAATCCTTCGCTTAGGAGGTTGATTAGTGGCGCGGTAGCTGGGGCAGTTTCCCGCACCACTGTGGCACCACTGGAGACTATAAGGACTCATTTAATGGTGGGAAGTAGTGGCCATTCTGTCGGTGAGGTGTTCCACAATATTATGAAGACTGATGGCTGGAAGGGATTGTTCAGGGGTAATCTCGTTAATGTGATTCGGGTTGCACCTAGCAAGGCCATAGAGTTATTTGCTTATGATACAGTTAACAAGAACCTATCGCCAAAACCTGGCGAACAACCCAAACTCTGTATTCCTGCATCATTAGTAGCAGGTGCATGTGCTGGAGTTAGTTCAACTATATGCACGTATCCTCTTGAATTACTCAAGACTCGACTAACTATCCAGAGAGGTGTTTATAATGGCCTACTTGATGCGTTCTTGAAAATACTTAAAGAAGAAGGCCCCGCTGAACTTTATAGAGGCCTTCTTCCCAGTCTTATAGGGGTAATTCCATATGCTGCCACCAATTACTTTGCCTATGACACATTAAGGAAAACATACCGAAAAGTTTTCAAGCAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGATCAGCAGCTGGTGCTATATCAAGTAGTGCCACTTTTCCACTTGAGGTAGCTCGCAAGCATATGCAAGTGGGAGCTCTCAGTGGAAGGCAGGTTTACAAAAATGTGATTCATGCACTTGCAAGCATACTTGAACAAGAAGGGATCCAGGGTTTATATAGGGGTCTGGGACCTAGCTGCTTGAAGTTAGTGCCAGCCGCTGGAATCTCTTTCATGTGCTATGAGGCGTGCAAGAGGATACTGGTAGAGGAAGAGGACGAGGCATAG 1200 0.4633 MGGKGLQLFDDKRDGLFSVCDLGSQWNRQDGYYYPGGLFASVGQVGMGFGIQPQPQPQPNPSDSRDSGGVKFPYAEVFVKYVESKGKVLTAGVWEEEELQSKKKGGLELKIKINNPSLRRLISGAVAGAVSRTTVAPLETIRTHLMVGSSGHSVGEVFHNIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLCIPASLVAGACAGVSSTICTYPLELLKTRLTIQRGVYNGLLDAFLKILKEEGPAELYRGLLPSLIGVIPYAATNYFAYDTLRKTYRKVFKQEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALASILEQEGIQGLYRGLGPSCLKLVPAAGISFMCYEACKRILVEEEDEA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2155 399 SUPERFAMILY Mitochondrial carrier 116 387 IPR023395 -
Dere05g2155 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 293 IPR018108 -
Dere05g2155 399 Pfam Mitochondrial carrier protein 117 199 IPR018108 -
Dere05g2155 399 Pfam Mitochondrial carrier protein 212 296 IPR018108 -
Dere05g2155 399 Pfam Mitochondrial carrier protein 303 394 IPR018108 -
Dere05g2155 399 Gene3D Mitochondrial carrier domain 112 397 IPR023395 -
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 312 334 IPR002067 GO:0055085
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 120 133 IPR002067 GO:0055085
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 224 242 IPR002067 GO:0055085
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 133 147 IPR002067 GO:0055085
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 266 284 IPR002067 GO:0055085
Dere05g2155 399 PRINTS Mitochondrial carrier protein signature 173 193 IPR002067 GO:0055085
Dere05g2155 399 PANTHER SOLUTE CARRIER FAMILY 25 111 392 - -
Dere05g2155 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 198 IPR018108 -
Dere05g2155 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 303 391 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2155 Dere-ChrDere05 31734245 31737038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2155 1 399 Organic Solute Cotransporters AT4G32400 66.169 0.0 514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2155 05 31734245 31737038 Dere04g0571 04 5683248 5686613 CCT
Dere05g2155 05 31734245 31737038 Dere05g2155 05 31734245 31737038 ECH