Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1962 ATGGACGTTGACCTCTATCCACACCCACTTCAGAGCTTACCTTGCAGCGCCAGATCATGTGAAAATACAAGCACGCATCTTGAGTGCACTATAGCCATGGCTTCCAACATCAAGCTCCGTGCAGTCATTTTTGTGCTATCTCTCCTAGCCTACTCAACATTCACCGATGCCAAATGTTGTTATATGCCGCCCACGGAGCAGTGCCCGAAGGACACGCTGAAGCTGTCGGTGTGTGCGGACGTTCTCGGACTCGTTAACGTTGTTGTGGGAACTCCTCTGTCAGCCAAGTGCTGTGCATTGCTGGAAGGTTTGGTGGACTTGGAGGCTGCACTTTGCCTCTGCACAGCTCTCAAGGCCAACGTGCTTGGAATCAACTTGAATGTCCCCGTCGCCCTCAGCTTAATCCTCAGTGCTTGTCAGAAGACCGTTCCTCCGGGTTTCCAATGTCCGTAG 453 0.5232 MDVDLYPHPLQSLPCSARSCENTSTHLECTIAMASNIKLRAVIFVLSLLAYSTFTDAKCCYMPPTEQCPKDTLKLSVCADVLGLVNVVVGTPLSAKCCALLEGLVDLEAALCLCTALKANVLGINLNVPVALSLILSACQKTVPPGFQCP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1962 150 Pfam Hydrophobic seed protein 68 150 IPR027923 -
Dere05g1962 150 Gene3D - 65 150 IPR036312 -
Dere05g1962 150 PANTHER - 41 149 - -
Dere05g1962 150 SMART aai_6 68 149 IPR016140 -
Dere05g1962 150 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 71 150 IPR036312 -
Dere05g1962 150 CDD HPS_like 67 149 IPR027923 -
Dere05g1962 150 FunFam pEARLI1-like lipid transfer protein 1 66 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1962 Dere-ChrDere05 29536280 29537563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1962 68 150 Acyl Lipid Metabolism Gene Families AT4G22490 43.529 4.32e-17 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1962 05 29536280 29537563 Dere04g0543 04 5484944 5485444 CCT
Dere05g1962 05 29536280 29537563 Dere05g1962 05 29536280 29537563 ECH