Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0543 ATGGTCCCTTCCTCTCCTCTCTCCTTGCCATTCTGCATCCAAACCAACCAAAACACTCTCTCTTATATCCCTCACTCCACTTTCTTCCTTCTGCAAGCAAGGCTACCCATGGCTTCCACCAAACTGTGTGCCACCATTTTGGTGCTCTCCCTCCTAGCTCACTCAACCTTCACCGAGGCCTGTGGGTCATGCAAGCCCATCCCCAAGCCCAAGCCGATACCCAAGCCTTGTCCTACTACTCCAGCAGTGCCTCAGTGCCCCACCTTGAAGCTTGGGGCGTGTGCTAACATTCTTGGCCTTGTAAACGTCGTCGTTGGATCTCCTGCTACAGCCCAGTGCTGTGGATTGCTGCAAGGTTTGGCAGATTTAGAGGCAGCACTTTGCCTCTGCACTGCCATTAAAGCCAACGTGCTTGGTATCAACTTGAATGCACCTCTCACCCTCAACTGCCTTCTCGGTGCTTGCCAAAGAACTGTTCCTCCAGGTTTCCAATGTCCATAG 501 0.5269 MVPSSPLSLPFCIQTNQNTLSYIPHSTFFLLQARLPMASTKLCATILVLSLLAHSTFTEACGSCKPIPKPKPIPKPCPTTPAVPQCPTLKLGACANILGLVNVVVGSPATAQCCGLLQGLADLEAALCLCTAIKANVLGINLNAPLTLNCLLGACQRTVPPGFQCP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0543 166 Pfam Hydrophobic seed protein 87 166 IPR027923 -
Dere04g0543 166 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 88 166 IPR036312 -
Dere04g0543 166 Gene3D - 82 166 IPR036312 -
Dere04g0543 166 CDD HPS_like 83 165 IPR027923 -
Dere04g0543 166 PANTHER - 43 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0543 Dere-ChrDere04 5484944 5485444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g0543 74 166 Acyl Lipid Metabolism Gene Families AT4G22490 40.000 7.75e-14 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1962 05 29536280 29537563 Dere04g0543 04 5484944 5485444 CCT
Dere04g0543 04 5484944 5485444 Dere04g0543 04 5484944 5485444 ECH