Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1929 ATGTTGTGTAAAAAGGTAATGGGACCGCGGAAGAAGATGCAGGGAAAGAATCCGGTTTACCTGAACGTCTATGACCTCACGCCAATTAATGGGTATGCGTATTGGTTTGGCCTCGGAGTCTATCATTCTGGTGTTCAAGTTCATGGTGTTGAATATGCATTTGGAGCGCATGACCGCCCCACATCGGGGATATTTGAATTAGAACCTCGGCGATGTCCTGGTTTCACTTTCAGAAAATCAATTTACATGGGATCAACAGATATGACCCTCAAAGAGGTCCGAGCTCATATGGAGAAACTAGCTGATAATTACCCTGGGAACGCATATCATCTTATCACAAAAAACTGCAACCATTTCTGTAACGATGTTTGTCTCAGATTAACCGGCAAATCAATACCTCGTTGGGTAAATCGACTCGCTCGTCTTGGATTTTTGTGCAACTGTGTTCTTCCACCTGAACTAAATGACACAAAGATTCGACAAGTCTCAGTGGATGGCGGGGCTGCCGAAGGTGGTAGGAAGAAACTAAGAAGCCATTCTAGAAGATGTAGCTTACCGTAA 561 0.4421 MLCKKVMGPRKKMQGKNPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYAFGAHDRPTSGIFELEPRRCPGFTFRKSIYMGSTDMTLKEVRAHMEKLADNYPGNAYHLITKNCNHFCNDVCLRLTGKSIPRWVNRLARLGFLCNCVLPPELNDTKIRQVSVDGGAAEGGRKKLRSHSRRCSLP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1929 186 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Dere05g1929 186 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Dere05g1929 186 PANTHER DESUMOYLATING ISOPEPTIDASE 15 165 IPR008580 GO:0008233
Dere05g1929 186 Gene3D PPPDE domains 12 164 IPR042266 -
Dere05g1929 186 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1929 Dere-ChrDere05 29276127 29278542 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1929 05 29276127 29278542 Dere04g0513 04 5198748 5202586 CCT