Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1906 ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCTCTTCAAACTGATGGAAAGTCTATCATCAGGTATGTGTCAACCGATTTGGCCACTGATGTCGTCATCAATGTTGGTGAAGTAAAATTTTACCTTCACAAGTTTCCTCTACTGTCTAAGAGCAATCGGCTGCAGAAGCTGGTGTCACAGGCCAATGAAGAGAATTCTGATGAAATATATATGGCAGATTTCCCTGGAGGGCCTAAGGCTTTTGAAATATGTGCTAAATTCTGCTATGGAATAACTGTTACTCTTAATGCTTACAACGTTGTGGCTGCCCGTTGTGCAGCAGAGTATCTTGAGATGAACGAACATATTGATAAAGGAAACTTGACTTTTAAGATTGAGGTGTTTCTAAACTCAAGTATCTTCCGTAGCTGGAAAGATTCCATAATTGTTCTTCAAACTGCTAAATCTCTCTTGCCATGGTCTGAAGATCTGAAGATAATTGGAAGATGCATAGATTCCATAGCTTCAAAAGCTTCTGTGAACCCAGCACACATCATGTGGTCTTACACATATAACAGGAAACTAAGCGAGCCTGATAAAATTACCGAGGACCATATGACATCTCAAGAGAAAATTGAGTCGGTTCCAAAGGATTGGTGGGTTGAAGATGTATGTGAGCTGGACATTGATCTTTACAAGCGAGTAATGATTGCCGTGAAATCAAAGGTAAAAATGGATGGTGTCATAATTGGAGAGGCTCTGAAATTCTATGCGGTCAGATGGTTGCCTGATTCTGTTGAGGCACTGGTTTCTGATGCCCATGCTCAGAGGAATAAATCTCTGGTAGAAACAATTGTCTGTTTATTGCCATCTGACTATGGCGTGGGCTGCTCATGTAGCTTCTTGCTGAAGCTATTAAAAGTGGCCATATTAGTAGGAGCAGATGAATCGTCCAGAGAAGAATTGATTAAGAGCATTAGCCTCAGACTGCATGAAGCTTCCGTCAAAGACTTACTGATCCCTGCAAGGTCTCCCCAGACAACCATATATGATTTTCCACTGGTACAAAGTCTTTTGAATCGATACATGACTTATGAAAGGGAAAGCTGTGATATGGAAGTTGTTCAGTACAAAGATAAAGGAAAAGGCTCCTTGAACATTGGCAAGTTGGTGGATGGTTACCTTGCAGAAATTGCACATGATACAAATCTTAGCATGTCTAGTTTCATTGAATTGTCAGAGTCAGTTCCAGAGTTTGCTCGACCATACCATGATGGCCTCTACAGAGCTATTGACATATACTTGAAGGAGCACCCGAGTCTAACAAAAGCGGAAAGGAAGAAGATATGTGGTCTGATGGATGTCAAGAAATTGACAGTGGACGCATCGATGCATGCTGCGCAGAATGAGCGACTTCCGCTTCGAGTTGTAGTGCAGGTTCTCTTCTATGAGCAGCTTAGAGCTTCTGCTAATGTTCGAGCTCTTAGTAACAGTCAACGTGATCATGCGCACTCTGTTACAAGTGCGGATGAGGATTGTGAGAAAACAGTGGGAGAGAATCGCCAGTCTTTCAGAAACCAGATGAGTCATTTGAGCATGAAAGATGAAGAGTTCCGTAAGAACGGGAAATTGAGCAAGAAGAATAGCAAGAACAGTAAGAGTGGCATGCAATTGCTGCCATCTCGGTCAAGGAGAATATTTGAGAAGTTGTGGATTGTGGGAAAAGGACAAGGAGAGAATAGGAGCTCCGAGACTTCAGGCAGTTCCAACAGCCCAACTTCTGTAGTTCCTGTAGATACCAAATCATCAGGTTCTTCTTCAAGACAAAGGAGGCATTCTATCTCTTAG 1830 0.4219 MKFMKLGSKPDALQTDGKSIIRYVSTDLATDVVINVGEVKFYLHKFPLLSKSNRLQKLVSQANEENSDEIYMADFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEYLEMNEHIDKGNLTFKIEVFLNSSIFRSWKDSIIVLQTAKSLLPWSEDLKIIGRCIDSIASKASVNPAHIMWSYTYNRKLSEPDKITEDHMTSQEKIESVPKDWWVEDVCELDIDLYKRVMIAVKSKVKMDGVIIGEALKFYAVRWLPDSVEALVSDAHAQRNKSLVETIVCLLPSDYGVGCSCSFLLKLLKVAILVGADESSREELIKSISLRLHEASVKDLLIPARSPQTTIYDFPLVQSLLNRYMTYERESCDMEVVQYKDKGKGSLNIGKLVDGYLAEIAHDTNLSMSSFIELSESVPEFARPYHDGLYRAIDIYLKEHPSLTKAERKKICGLMDVKKLTVDASMHAAQNERLPLRVVVQVLFYEQLRASANVRALSNSQRDHAHSVTSADEDCEKTVGENRQSFRNQMSHLSMKDEEFRKNGKLSKKNSKNSKSGMQLLPSRSRRIFEKLWIVGKGQGENRSSETSGSSNSPTSVVPVDTKSSGSSSRQRRHSIS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1906 609 MobiDBLite consensus disorder prediction 524 538 - -
Dere05g1906 609 PANTHER OS12G0117600 PROTEIN 24 561 IPR043454 -
Dere05g1906 609 Pfam NPH3 family 212 457 IPR027356 -
Dere05g1906 609 Pfam BTB/POZ domain 29 118 IPR000210 GO:0005515
Dere05g1906 609 MobiDBLite consensus disorder prediction 498 513 - -
Dere05g1906 609 CDD BTB_POZ_NPY3-like 22 125 - -
Dere05g1906 609 SUPERFAMILY POZ domain 22 118 IPR011333 -
Dere05g1906 609 ProSiteProfiles BTB domain profile. 30 98 IPR000210 GO:0005515
Dere05g1906 609 SMART BTB_4 30 128 IPR000210 GO:0005515
Dere05g1906 609 MobiDBLite consensus disorder prediction 572 609 - -
Dere05g1906 609 ProSiteProfiles NPH3 domain profile. 212 481 IPR027356 -
Dere05g1906 609 MobiDBLite consensus disorder prediction 490 553 - -
Dere05g1906 609 Gene3D Potassium Channel Kv1.1; Chain A 13 121 IPR011333 -
Dere05g1906 609 MobiDBLite consensus disorder prediction 570 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1906 Dere-ChrDere05 28974401 28977882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1906 23 501 EF-hand Containing Proteins AT3G44820 32.948 6.34e-95 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1906 05 28974401 28977882 Dere04g0497 04 4970932 4974455 CCT
Dere05g1906 05 28974401 28977882 Dere05g1906 05 28974401 28977882 ECH