Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1654 ATGGCTTCGTTTAGATCGTCTCCTGCCATGATGATCGTCCTTTTGTTCACCGTCTTCACCTTGTCGTCGGCCTTGGACATGTCGATCATCTCCGCCGACAGAGCTCACGGCGACCGGTCAAACTGGAGGACGGATGAAGAGGTCATGGCCATGTACGAACACTGGCTTGTAAAACATGGCAAGGTCTACAACGATTTGGGAGAGAAAGAGAAGAGGTTCGAGATCTTCAAGGACAACCTCAGGTTCATCGATGAGCACAACGCTGAGAATCGGACCTACAAGCTGGGTTTGAATCGGTTCGCTGATCTAACCAACGAGGAGTACCGGGCCAAGTATCTTGGAACCAGGATTGATCACAAGAGGAGGATTGCCAAGACCAGGAGCAACCGTTACGCTCCACGTGTCGGTGACAATTTACCGGAATCTGTTGATTGGAGGAAGAAAGGTGCCGTCGCCGAAGTCAAAGACCAAGGAAGTTGCGGGAGCTGTTGGGCATTTTCAACTGTCTGTGCGGTGGAAGGAATTAATAAGATAGTGACCGGAGATCTAATTTCACTATCAGAGCAAGAGCTGATGGACTGTGATAGATCTTATAACCAAGGATGCAATGGTGGCCTCATGGACTACGGTTTCCAGTTCATCATCAACAACGGTGGCATTGACACCGAAGAGGATTACCCCTACCGTGCTGTTGATGGTACATGTGACACATACAGGAAAAATGCTAGAGTCGTCGATATTGATGGGTACGAGGATGTTCCTGTCAATGATGAGGGAGCATTGAAAAAGGCTGTTGCAAATCAGCCGGTGAGCGTTGCCATTGAGGGTGGTGGCAGGGAATTCCAGTTATACGTATCTGGTATCTTTACGGGAAGATGTGGTACAGCATTAGACCATGGTGTTAATGCTGTCGGATATGGTACAGAAAATGGTCTTGATTATTGGATAGTGAGGAACTCATGGGGCAAGAGCTGGGGAGAGGATGGGTATATTAGAATGGAACGTAATCTGGCTACAACCAATACTGGAAAATGTGGAATCGCAATGGAGTCCTCCTACCCCATCAAGAAAGGCCCAAATCCCCCTAACCCTGGGCCATCACCCCCTTCACCTGTGAAGCCACCAACTGTGTGTGATAGTTACTACAGCTGTGCTGAGAGCACTACTTGCTGCTGCGTATACGAGTATGGAAATTACTGCTTTGCATGGGGATGCTGTCCTCTTGAGGCTGCTACCTGCTGTGAGGACCACTACAGTTGCTGCCCTCACGACTATCCTGTCTGCAACATTGACGAAGGCACCTGTCTCATGAGCAAGGACAGTCCTTTTGGAGTGAAGGCTATGAGGCGAACTCCAGCTAAACCCTACTGGGCTTTTGGAGCTAAGAACAAGCTAAGCAGCGCTTGA 1407 0.4918 MASFRSSPAMMIVLLFTVFTLSSALDMSIISADRAHGDRSNWRTDEEVMAMYEHWLVKHGKVYNDLGEKEKRFEIFKDNLRFIDEHNAENRTYKLGLNRFADLTNEEYRAKYLGTRIDHKRRIAKTRSNRYAPRVGDNLPESVDWRKKGAVAEVKDQGSCGSCWAFSTVCAVEGINKIVTGDLISLSEQELMDCDRSYNQGCNGGLMDYGFQFIINNGGIDTEEDYPYRAVDGTCDTYRKNARVVDIDGYEDVPVNDEGALKKAVANQPVSVAIEGGGREFQLYVSGIFTGRCGTALDHGVNAVGYGTENGLDYWIVRNSWGKSWGEDGYIRMERNLATTNTGKCGIAMESSYPIKKGPNPPNPGPSPPSPVKPPTVCDSYYSCAESTTCCCVYEYGNYCFAWGCCPLEAATCCEDHYSCCPHDYPVCNIDEGTCLMSKDSPFGVKAMRRTPAKPYWAFGAKNKLSSA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1654 468 Gene3D Cysteine proteinases 35 357 - -
Dere05g1654 468 SUPERFAMILY Granulin repeat 375 409 - -
Dere05g1654 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Dere05g1654 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Dere05g1654 468 SMART GRAN_2 378 435 IPR000118 -
Dere05g1654 468 Gene3D Granulin 375 438 IPR037277 -
Dere05g1654 468 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 353 IPR013128 GO:0008234
Dere05g1654 468 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Dere05g1654 468 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Dere05g1654 468 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Dere05g1654 468 FunFam Cysteine protease 1 28 357 - -
Dere05g1654 468 CDD Peptidase_C1A 140 354 IPR039417 -
Dere05g1654 468 Pfam Granulin 389 436 IPR000118 -
Dere05g1654 468 SUPERFAMILY Cysteine proteinases 43 355 IPR038765 -
Dere05g1654 468 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Dere05g1654 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Dere05g1654 468 SMART Inhibitor_I29_2 52 108 IPR013201 -
Dere05g1654 468 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Dere05g1654 468 FunFam Cysteine protease 1 375 438 - -
Dere05g1654 468 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1654 Dere-ChrDere05 26255889 26259558 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1654 05 26255889 26259558 Dere04g0286 04 2926316 2937250 CCT
Dere05g1654 05 26255889 26259558 Dere05g1654 05 26255889 26259558 ECH