Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0286 ATGTCTCGGAGCTTGAGCTTGAATTGCCCACCTGTAACAAATTTGGGCCAAAGGGAAGAGCTTGTACGATATGGCCTACCAAACAAAGGCAGTTCATGGGCGTGGTCAGTCTTGCCCAGTTCTCCGTTCTCACGTACCCAATTCTCCTATGACAGTAAAAATATTTGTGGGTCCCCATTCGCTGCCCCTTTTCCCCACTGCTATCGTGCTCTTGTTCCTCCTCCCTCAAGAAGTTTCTCACTCAAATATCACAGCAGGATGGGTATGTCTAGATCGTCCCGCGCCATGATCGTGCTTCTGTTCATGGTCTTCACAGTGTCTTCGGCGTTGGACATGTCCATAATCTCCTACGACCGAACCCACGCCGACAAGTCCACCTGGAGGACGGATGATGAGGTCATGGCTATATACGAGCACTGGCTTGTGAAAAATGGCAAGGCCTACAATGCTCTGGGCGAGACGGAGAAGAGGTTCGAGATCTTCAAGGACAATCTCAGGTTCATCGATGATCACAACGCTGAGAATCGGACCTACAAGATCGGGTTGAACCGATTCGCTGATCTTACCAACGAGGAGTACCGGATCAAGTACCTGGGAACCAAGATTGATCACAGGAGGAGGATTGCCAAGACCAGGAGCAACCGTTACACTTCAAAGGTCGGCGACAAATTGCCGGAATCTGTTGATTGGAGGAAGGAAGGTGCGGTCGTCCAGGTCAAAGACCAAGGAAGTTGCGGGAGTTGCTGGGCATTCTCAACCGTGGCTGCAGTGGAAGGAATAAATAAGTTAGTGACAGGTGATCTAATTTCGCTATCAGAGCAAGAACTGATGGACTGTGATAGAACATATAACCAAGGGTGCAATGGCGGACTAATGGACTATGCCTTTGAGTTTATCATCAACAATGGTGGCATTGACACCGAAGAGGATTACCCCTACCGTGCCGTAGATGGCCAATGCGACCAATACAGGAAAAATGCAAAAGTTGTAACAATTGATGGCTATGAAGATGTTCCCGCAAATGATGAGAAAACATTGAAAAAGGCTGTTGCAAATCAACCAGTGAGCGTTGCCATTGAAGCAGGTGGTAGGGAATTTCAGTTATATGTATCTGGTATATTTACGGGAAGATGTGGAACAGCATTAGATCATGGTGTTACGGCTGTTGGTTATGGTACGGAAGATGGTTTAGATTACTGGATTGTGAAGAATTCATGGGGAAAGAGTTGGGGAGAGGAAGGGTATATTAGAATGGAACGTAATCTGGACAAAACCAGTACGGGCAAGTGTGGAATTGCAATGGAGGCCTCCTATCCTACCAAGAAAGGCCTAAATCCCCCAAACCCTGGACCATCTCCCCCTTCACCTGTGAAGCCACCTACTGTTTGTGATAATTACTACAGTTGTCCCGAGAGCACTACTTGCTGCTGCGTATACGAGTATGGAAAGTATTGTTTTGCCTGGGGATGCTGTCCTCTTGAGGCTGCTACCTGCTGTGAAGACCACTACAGTTGCTGCCCTCACGACTATCCCATCTGTAACATCGACGCTGGCACTTGTCTCATGAGTAAGGACAACCCCTTTGGAGTGACGGCAATGACACGAACTCCAGCTAAACCCCACTGGGCATTTGGAGATATGAATAGGAGAGGCAGTGCTTGA 1662 0.4813 MSRSLSLNCPPVTNLGQREELVRYGLPNKGSSWAWSVLPSSPFSRTQFSYDSKNICGSPFAAPFPHCYRALVPPPSRSFSLKYHSRMGMSRSSRAMIVLLFMVFTVSSALDMSIISYDRTHADKSTWRTDDEVMAIYEHWLVKNGKAYNALGETEKRFEIFKDNLRFIDDHNAENRTYKIGLNRFADLTNEEYRIKYLGTKIDHRRRIAKTRSNRYTSKVGDKLPESVDWRKEGAVVQVKDQGSCGSCWAFSTVAAVEGINKLVTGDLISLSEQELMDCDRTYNQGCNGGLMDYAFEFIINNGGIDTEEDYPYRAVDGQCDQYRKNAKVVTIDGYEDVPANDEKTLKKAVANQPVSVAIEAGGREFQLYVSGIFTGRCGTALDHGVTAVGYGTEDGLDYWIVKNSWGKSWGEEGYIRMERNLDKTSTGKCGIAMEASYPTKKGLNPPNPGPSPPSPVKPPTVCDNYYSCPESTTCCCVYEYGKYCFAWGCCPLEAATCCEDHYSCCPHDYPICNIDAGTCLMSKDNPFGVTAMTRTPAKPHWAFGDMNRRGSA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0286 553 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 399 418 IPR025661 -
Dere04g0286 553 SMART GRAN_2 463 520 IPR000118 -
Dere04g0286 553 Pfam Papain family cysteine protease 224 440 IPR000668 GO:0006508|GO:0008234
Dere04g0286 553 PRINTS Papain cysteine protease (C1) family signature 384 394 IPR000668 GO:0006508|GO:0008234
Dere04g0286 553 PRINTS Papain cysteine protease (C1) family signature 242 257 IPR000668 GO:0006508|GO:0008234
Dere04g0286 553 PRINTS Papain cysteine protease (C1) family signature 399 405 IPR000668 GO:0006508|GO:0008234
Dere04g0286 553 SUPERFAMILY Cysteine proteinases 128 440 IPR038765 -
Dere04g0286 553 Pfam Granulin 474 521 IPR000118 -
Dere04g0286 553 FunFam Cysteine protease 1 113 442 - -
Dere04g0286 553 Gene3D Granulin 460 523 IPR037277 -
Dere04g0286 553 SMART Inhibitor_I29_2 137 193 IPR013201 -
Dere04g0286 553 FunFam Cysteine protease 1 460 523 - -
Dere04g0286 553 Pfam Cathepsin propeptide inhibitor domain (I29) 137 193 IPR013201 -
Dere04g0286 553 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 242 253 IPR000169 -
Dere04g0286 553 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 130 438 IPR013128 GO:0008234
Dere04g0286 553 Gene3D Cysteine proteinases 108 442 - -
Dere04g0286 553 CDD Peptidase_C1A 225 439 IPR039417 -
Dere04g0286 553 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 382 392 IPR025660 -
Dere04g0286 553 SUPERFAMILY Granulin repeat 460 494 - -
Dere04g0286 553 SMART pept_c1 224 440 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0286 Dere-ChrDere04 2926316 2937250 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1654 05 26255889 26259558 Dere04g0286 04 2926316 2937250 CCT
Dere04g0286 04 2926316 2937250 Dere04g0286 04 2926316 2937250 ECH