Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1202 ATGAGTCAGCTGGCTATGGATTTATCGCCCTTGATTGCTAGTTTGTCAGATGATAACTTTCAGAGAACAGGGAATACAAGGAGTGCAGTGGCACACATCATAACCGGTGTGATTGGGGCAGGGGTGCTGTCTCTGGCATGGTCTGTGGCTCAGCTTGGGTGGATTGCAGGTCCATTGTGCGTCATTCTCTTTGCAATCACTACCCTTGTTTCAGCATACCTTATCTGTGACTGCTACAGATTCCCTGATCCTGACTATGGAATCAATAGGAACCGCTCCTACGCAGATGCTGTCAAAGTGTACCTAGGGGAGACAAGGCAAAAGGCGTGTGGAATTTTGGTGCAAGTGAGCTTATGTGGCACTAGCATTGCTTATATCATTACAACTGCCAGCAGCATCAGGGAAGAAAATGGCAAGCTTGCCAAAAGTTTTGTAGATATGGAGCAAGCTCTCAATTACATGAGGAAAAATGAGAAGGATTCGACACATGATGTTAGCTCAACAACTCCACCTTTTACCCTAGAAATCTTGAAGCCTAACCCATGA 546 0.4579 MSQLAMDLSPLIASLSDDNFQRTGNTRSAVAHIITGVIGAGVLSLAWSVAQLGWIAGPLCVILFAITTLVSAYLICDCYRFPDPDYGINRNRSYADAVKVYLGETRQKACGILVQVSLCGTSIAYIITTASSIREENGKLAKSFVDMEQALNYMRKNEKDSTHDVSSTTPPFTLEILKPNP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1202 181 Pfam Transmembrane amino acid transporter protein 23 136 IPR013057 -
Dere05g1202 181 PANTHER OS05G0424000 PROTEIN-RELATED 28 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1202 Dere-ChrDere05 19278495 19282569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1202 8 134 Organic Solute Cotransporters AT5G23810 55.906 6.36e-43 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1771 04 20246863 20249562 Dere05g1202 05 19278495 19282569 CCT
Dere05g1202 05 19278495 19282569 Dere05g1202 05 19278495 19282569 ECH