Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1298 ATGGGTGAGGAAGCTAAACAGGAACCACCCGAGGCAGAGGCCAAGCCAGAGGAGAAGAAAGAAGTGAAAACAGAGGAAAAACCTCAAGAGGAGAAGAAAGAAGAGAAAGCAGAGGAAAAACCAGCAGAGGAGAAGAAGGAAGAGCCTAAACCACCACCACCATGCGTGCTGTCTGTCGACTTGCATTGCGTGGGATGTGCCAAGAAAATTCAGAAATCTATTATGAAAATGAGAGGAGTTGAGGGAGTGGTCATTGATATGGCTAAAAATGAAGTAACAATAAAGGGGATAGTGGAACCACAAGCAATCTGCAACAAAATTACTAAGAGAACAAAAAGAAAAACCAAAATTATTTCTCCATTGCCTGCAGCAGAAGGAGAACCTATACCAGAAGTTGTAACATCTCAGGTTAGTGGACCAGTAACAGTGGAACTTAATGTAAACATGCACTGTGAGGCCTGTGCTGAGCAACTCAAGAGGAAAATACTAAAAATGAGAGGAGTGCAAACAGCATCGACAGAACTAAGCACGGGGAAGGTTATTGTGACAGGGACCATGGAGGCCAACAAATTAGTGGAATATGTCTATAGACGCACCAAAAAGCAAGCCAAAATAGTTCCACAACCAGAGCCTGAACCAGAGAGGAAGGAAGAAGCTAAAGAAGCCGAGAAACCAGCAGAAGAGGCTAAACCTGAAGAGAAAAAGGAAGAGAGCACAGAGAAGAAAGAAGAGGAGAAACCAGCAGAGGAACCCAAGAAAGAAGAGGGTGATAAAGGAGGAGGTGAAGGTGGTGAAAATAAGAGTGAGAATAAAGAAGAAAAGGGTGGTGAAGAAAGCAAGGAAGAGCCCAAGAAAGAAGGGGGAGATCACAATGAGGTGGTTGCCATAGATGAGGAAGGCATGAAGAGGATGATGTACTATTATCAGCCAGTCTATGTGATTGAACGAATCCCACCTCCTCAGCTCTTCAGTGATGAAAATCCCAATGCGTGCTGCATTTCATAA 1005 0.4398 MGEEAKQEPPEAEAKPEEKKEVKTEEKPQEEKKEEKAEEKPAEEKKEEPKPPPPCVLSVDLHCVGCAKKIQKSIMKMRGVEGVVIDMAKNEVTIKGIVEPQAICNKITKRTKRKTKIISPLPAAEGEPIPEVVTSQVSGPVTVELNVNMHCEACAEQLKRKILKMRGVQTASTELSTGKVIVTGTMEANKLVEYVYRRTKKQAKIVPQPEPEPERKEEAKEAEKPAEEAKPEEKKEESTEKKEEEKPAEEPKKEEGDKGGGEGGENKSENKEEKGGEESKEEPKKEGGDHNEVVAIDEEGMKRMMYYYQPVYVIERIPPPQLFSDENPNACCIS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1298 334 SUPERFAMILY HMA, heavy metal-associated domain 57 110 IPR036163 GO:0046872
Dere04g1298 334 MobiDBLite consensus disorder prediction 1 54 - -
Dere04g1298 334 SUPERFAMILY HMA, heavy metal-associated domain 137 201 IPR036163 GO:0046872
Dere04g1298 334 Pfam Heavy-metal-associated domain 57 109 IPR006121 GO:0046872
Dere04g1298 334 Pfam Heavy-metal-associated domain 146 193 IPR006121 GO:0046872
Dere04g1298 334 Gene3D - 139 205 - -
Dere04g1298 334 Gene3D - 54 115 - -
Dere04g1298 334 Coils Coil 20 40 - -
Dere04g1298 334 MobiDBLite consensus disorder prediction 1 51 - -
Dere04g1298 334 CDD HMA 144 204 IPR006121 GO:0046872
Dere04g1298 334 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 1 334 IPR044258 GO:0046872
Dere04g1298 334 ProSiteProfiles Heavy-metal-associated domain profile. 140 204 IPR006121 GO:0046872
Dere04g1298 334 CDD HMA 56 109 IPR006121 GO:0046872
Dere04g1298 334 MobiDBLite consensus disorder prediction 202 294 - -
Dere04g1298 334 ProSiteProfiles Heavy-metal-associated domain profile. 52 115 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1298 Dere-ChrDere04 14742753 14744817 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0729 05 12798449 12801591 Dere04g1298 04 14742753 14744817 CCT
Dere04g1298 04 14742753 14744817 Dere04g1298 04 14742753 14744817 ECH