Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g0921 ATGGCAGGAAAGGGAAAGAACGAGGTGGAGGATGAATTCGGTTGTGGTTTCATGGGGAGGATTTTCCAACTCAAAAGGTATAAGCTGAGAAAATCATCTGTTCATTCACTACCCATGAGGGCTAGCAACAATGTACAGAGCGATCAGAGCAAGACTGAATCCAAGAAGCCTCCAAATCATGAATCCAAGGGTACGCCCATTGAGTCATACAAACCGGCGAGAAGGAGCGCTTCTGGTCATCGAACACCTCCTACCAACCGAAACAATCAAAATCCGAGACCTTCCGATGCTCCACGAAGCTCAACATCACCCTCTGCTAATTCAACCCAAACTAAGAATCAACAAAACCACAACTTGAATGATGACAGAAAGATACAGAAAGAGCCCGCTGAAAACTCTTTGGAGCTTGCTAGGATAAGTACTCATTACCAGCGAGAAAAAGAGAACAAATCCCCCCTCAAACTTACTGGTAATTTGCTTGTACGTAACAGCCCAAGAACTAGTACTAAGAGTCTTGAAAGCGTTCCCAAGAGAAAAGATTTGAACTCTGTGCATAATTCTTACGGTAACGCCAGTATAGGCGTTACAGGGAATATTATGAAGAGGAATAGTGATGAGCTTGCGCAACTCCGAAGTCCGAGGAACAGAGTAGACCCTGAGGTGTTGAAGACAATGGGAAATGAAGCATATAAGCAGGGGAGATTTGAGGAGGCTTTGGCTTTGTATCAGCGAGCAATTGGTATTAATTCAAATAAGGCAACGTATCATTGCAACAAGAGTGCAGCATTGATAGGCTTAGGCCGCCTTCTGGAAGCGATTGTTGAGTGCCAGGAAGCTATCCGCCTGGAGCCATCTTATAACAGACCCTATCACCGTTTGGCAACCATATATCTCAGACTGGGAGAAGCCGAAAAAGCACTAAGTTACAATGATGCAACCTCATATGCTGATTCTATACTCACTTTCCAAGCTCAGTCTCTTCGGAATCACCTTCAAAAATGCTTTGAAGCTAGGAAAGTCAATGAGTGGGATGTTATACTCAAGGAAACACAGTCTGCAATATCATTAGGTGCTGATTCGAGTCCTCAGGTTTATGCTTTACAAACGGAAGCCTTACTTAAACTCTTCAGACAGCAAGAGGCATATGCTACCTATGAGAAGATGCCCAAATTTGCAACTAATTGGTGTACCAAGTTATTTGGTCTGGCTCGTAGTGCTTACCTGCAAATGATAGGCGCCCAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCGGTGACAGCAGCTGAGCAAGCAGCAAAACTTGATCCAAGCGACAAAGAAGTGAATACAATGGTAAAGAGGGCGAGAGCAGTGACATCAGCCAGAATGGGTGGTAACTTACTGTTCAAGGCATCTAAATATATGGAGGCGTGTGCAGTATACAACGAAGGACTGGAGCATGATCCGTACAATTCCGTTCTACTATGCAACAGAGCAGCATGTCGTTCAAAGCTAGGCCAATTTGAGAAAGCAATTGAAGATTGTAATGCAGCCCTTGCAGTTCAGCCTAGTTACAGCAAGGCACGGCTAAGAAGGGCGGATTGCAATGCGAAGTTGGAAAGATGGGAAACTGCGATTCAAGACTATGAAGTGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGGTAGGGCTCTGTTTGAGGCCCAACTCCAGCTCAAGATGCTGCGTGGGGAAGATGTTAAGGACTTCAAATTTGGGTCTAATTTGGTATTTATATCTAGCAATGATCGGTTTAGACATTATGTAACCTCACCAGGGATGTCTGTGGTGCTATTTTGCAACAAGGCAACCCACAAGCAGGTGTTGTTAGTGTTGGAGCAAACCTGCAAGAGGTTTCCATCTGTTAATTTCCTCAAGGTGGAAATTGAGGACCACCCCTATTTAGCGAAATCAGAAGGCGTGAGCTCTATCCCAGCATTCAAAATATATAAGAATGGGTCAAGGGTTAAGGAAATTCCAGGCAATAACCACGAGTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2055 0.4448 MAGKGKNEVEDEFGCGFMGRIFQLKRYKLRKSSVHSLPMRASNNVQSDQSKTESKKPPNHESKGTPIESYKPARRSASGHRTPPTNRNNQNPRPSDAPRSSTSPSANSTQTKNQQNHNLNDDRKIQKEPAENSLELARISTHYQREKENKSPLKLTGNLLVRNSPRTSTKSLESVPKRKDLNSVHNSYGNASIGVTGNIMKRNSDELAQLRSPRNRVDPEVLKTMGNEAYKQGRFEEALALYQRAIGINSNKATYHCNKSAALIGLGRLLEAIVECQEAIRLEPSYNRPYHRLATIYLRLGEAEKALSYNDATSYADSILTFQAQSLRNHLQKCFEARKVNEWDVILKETQSAISLGADSSPQVYALQTEALLKLFRQQEAYATYEKMPKFATNWCTKLFGLARSAYLQMIGAQVYLAAGRFEDAVTAAEQAAKLDPSDKEVNTMVKRARAVTSARMGGNLLFKASKYMEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALAVQPSYSKARLRRADCNAKLERWETAIQDYEVLLREKPGDEEVGRALFEAQLQLKMLRGEDVKDFKFGSNLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEIPGNNHELLERSVKLYSS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g0921 684 MobiDBLite consensus disorder prediction 79 116 - -
Dere04g0921 684 Pfam Tetratricopeptide repeat 413 486 - -
Dere04g0921 684 MobiDBLite consensus disorder prediction 33 123 - -
Dere04g0921 684 Pfam Thioredoxin 614 675 IPR013766 -
Dere04g0921 684 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 680 IPR044534 -
Dere04g0921 684 Pfam Tetratricopeptide repeat 488 519 IPR001440 GO:0005515
Dere04g0921 684 SUPERFAMILY TPR-like 459 568 IPR011990 GO:0005515
Dere04g0921 684 SMART tpr_5 451 485 IPR019734 GO:0005515
Dere04g0921 684 SMART tpr_5 520 553 IPR019734 GO:0005515
Dere04g0921 684 SMART tpr_5 219 252 IPR019734 GO:0005515
Dere04g0921 684 SMART tpr_5 486 519 IPR019734 GO:0005515
Dere04g0921 684 SMART tpr_5 406 439 IPR019734 GO:0005515
Dere04g0921 684 SMART tpr_5 253 286 IPR019734 GO:0005515
Dere04g0921 684 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Dere04g0921 684 Gene3D Tetratricopeptide repeat domain 217 571 IPR011990 GO:0005515
Dere04g0921 684 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Dere04g0921 684 Gene3D Glutaredoxin 579 683 - -
Dere04g0921 684 SUPERFAMILY Thioredoxin-like 583 670 IPR036249 -
Dere04g0921 684 MobiDBLite consensus disorder prediction 36 52 - -
Dere04g0921 684 Pfam TPR repeat 226 261 - -
Dere04g0921 684 CDD TRX_family 593 671 - -
Dere04g0921 684 SUPERFAMILY TPR-like 219 441 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g0921 Dere-ChrDere04 9658133 9661017 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2401 05 34436051 34438691 Dere04g0921 04 9658133 9661017 CCT
Dere04g0921 04 9658133 9661017 Dere04g0921 04 9658133 9661017 ECH