Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1158 ATGAGCTGGACTGGAGGAGATTGGATGTGTGGAGCTTGCCAGCACATAAACTTCAAGAAAAGGGATGCATGCCAACGTTGTGGATACCCCAAGTTTGGAGGCCCTGACCCTGCAACTTATGGATACAATAGGACTGAAACCTTAGCAGGAGACTGGTTTTGCACCGCCATTAACTGTGGAGCTCACAACTATGCCAGCCGATCAAGCTGCTACAGATGCGGTACAGTCAAAGATGATTATGCTTCTGCATATGGGGCAAACATGACGGCTTCCGGAGGATATGGATCAGATTGCAGTTTCCCTCCGGGATGGAAGAGTGGTGATTGGATTTGCACTAGATTTGGCTGTGGAGTACATAACTATGCTAGCAGGACAGAATGCTTCAAGTGCAGAACACCAAGAGATTTTGGTGAGAAAAGTTTAGTCTTCTGGATGTTTTCTCTGTGTAGCTTTGAAAAATTTTCACAAGCTTTCTTAGCAAGAGATATTCCACATCAGTTCAATGATACAATTATTATTTCTATTTCAGGTGGTGCAGACTGA 543 0.4438 MSWTGGDWMCGACQHINFKKRDACQRCGYPKFGGPDPATYGYNRTETLAGDWFCTAINCGAHNYASRSSCYRCGTVKDDYASAYGANMTASGGYGSDCSFPPGWKSGDWICTRFGCGVHNYASRTECFKCRTPRDFGEKSLVFWMFSLCSFEKFSQAFLARDIPHQFNDTIIISISGGAD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1158 180 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Dere03g1158 180 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Dere03g1158 180 SUPERFAMILY Ran binding protein zinc finger-like 44 79 IPR036443 -
Dere03g1158 180 Gene3D - 43 79 - -
Dere03g1158 180 Gene3D - 1 35 - -
Dere03g1158 180 Gene3D - 101 136 - -
Dere03g1158 180 SMART zf_4 107 133 IPR001876 -
Dere03g1158 180 SMART zf_4 50 76 IPR001876 -
Dere03g1158 180 SMART zf_4 6 30 IPR001876 -
Dere03g1158 180 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Dere03g1158 180 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Dere03g1158 180 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Dere03g1158 180 PANTHER ZINC FINGER PROTEIN 45 138 - -
Dere03g1158 180 SUPERFAMILY Ran binding protein zinc finger-like 102 136 IPR036443 -
Dere03g1158 180 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Dere03g1158 180 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Dere03g1158 180 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Dere03g1158 180 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1158 Dere-ChrDere03 18660871 18661851 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0263 14 2731472 2734842 Dere03g1158 03 18660871 18661851 CCT