Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g1049 ATGTCGAAGCTGCTTCTACACAGCTCTCGTCGCAGCGCCATTAGCCGTTGCACAGCCTTTGTTGCAACATTTTTCTCTTCAACTTCCTCTTCTGCTGCTCTTTATCCTCTCCCACTTCAATGTCGCTCCCCACTTTCTCTTCCGTCTCCTTCCCAATCTTTCCGACCCTTTCGGTCCGCCAAATACCTGTCATTTCATGCCTTCCATTCTTACTCCTCAAAATCGAAAGAAGAGTTTCTTGCGAAGGAGTCCAGGTCTTACGGCGGCGTTACTAATCAAAGTGCTAGAGTTGCTGATGAGGATTATCCTAGAGGCGACTTTGAATTTGCACCTATTACTGGGTGGAGGAAATTTCTTCTGACGCTCAAGATGCTCATTGCATCCCCTTTAGAGGGGGTCCGTAAGGGCAGTGTTCTTACAATGAAGTTGCGGGGCCGGATATCTGATCAGCTAAAGAGTCCATTCTCTCAAGGACTATCTCTACCTCAAATTTGTGATAACTTTTTAAAAGCAGCATATGATCCTCGTATTTCTGGTATCTATCTCCATATTGATAATTTGACTTGCGGATGGGGTAAAGTTGAAGAAATTCAAAGGCAAATATTGAATTTCAAAAGATCTGGGAAATTTGTTGTGGCTTACGTCCCTTCATGTCGAGAAAAGGAATATTACCTTGCATGTGCATGTGAAGAGATATATGCCCCTCCAAGTGCTTATTTTTCATTGTTTGGATTCACTGTTCAAGCATCATTCCTCAGAGGTGTTTTGGACAACATAGGAATTGAACCACAAGTTGAAAAGATTGGGAAATACAAAAGTGCAGGAGATCAACTAACCCGTAGAACCATGTCTGAAGAAACTCGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTGGATAAAGTCTCTTCTTTGAGAGGAAAGAAAAGAGAAGAGATTGAGAATTTCATAAATGAAGGAGTATATCAAGTAGACAGGTTGAAAGAAGAAGGCTTCATAACAAACACAATGTATGATGATGAGGTTATTGCTAAGTTGAAGGAGAGACTCGGTTTGAAAACAAATGAAAATCTTCCTCTGGTGGATTACAGGAGATACTCTGGAGTTAGGAAATGGACAGTTGGAATATCAGGTGGTAAGGAAATGATAGCCATCATCCGAGCCTCGGGGAGCATTAGTCGTGTCAAGAGTCCATTGACTGCGTCTAGTTCGGGTATTATTGCTGAGCAGTTCATTGAGAAGATTCGTAGAGTGAGAGTGTCAAAACAATATAAGGCTGCTATTATCCGAATTGACAGTCCTGGAGGTGATGCCCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTTTGGCTGCCTCAAAACCAGTCATTGCCTCATTGTCTGATGTGGCAGCAAGCGGTGGTTACTACATGGCAATGGGGGCAGGAACTATTGTAGCAGAACGTCTAACCTTAACCGGTTCAATTGGAGTGGTTAAAGGCAAATTTAGCCTGGGGAAACTATATGAGAAGATTGGCTTCAACAAGGATATCATATCAAGGGGAAAATATGCTGAGGTCCTTGCTGCTGAACAACGTCCTTTTAGACCGGATGAGGCAGAGCTATTTGCCAAGTCTGCACAGCATATTTATAAACAATTTCGAGATAAGGCAGCTTTTTCTAGATCAATGACTGTAGACAAGATGGAGGAGATTGCACAGGGGAGAGTTTGGGCTGGTGAAGCTGCAGCTTCATGTGGCTTAGTTGATGCTATTGGTGGGCTTTCTCGAGCTATTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGACAGACAGGTTACTCTTGTGGAGCTTTCCAGGCCTTCCCTACCAGAGATTTTAAGTGGCATAGGGACTACCCTCGTTGGAGTAGATAGAACATTGAAGGAACTGCTTCAGGACTTGACTTCTGATGGCGTTCAAGCCCGCATGGATGGAATCATGTTTGAGAGAATGGAAGGATATCCTTACCCCAAAACCATTTTAACATTGATGAAGGATTTCCTTAGTTCCCCGTAG 2055 0.4307 MSKLLLHSSRRSAISRCTAFVATFFSSTSSSAALYPLPLQCRSPLSLPSPSQSFRPFRSAKYLSFHAFHSYSSKSKEEFLAKESRSYGGVTNQSARVADEDYPRGDFEFAPITGWRKFLLTLKMLIASPLEGVRKGSVLTMKLRGRISDQLKSPFSQGLSLPQICDNFLKAAYDPRISGIYLHIDNLTCGWGKVEEIQRQILNFKRSGKFVVAYVPSCREKEYYLACACEEIYAPPSAYFSLFGFTVQASFLRGVLDNIGIEPQVEKIGKYKSAGDQLTRRTMSEETREMLTALLDNIYTNWLDKVSSLRGKKREEIENFINEGVYQVDRLKEEGFITNTMYDDEVIAKLKERLGLKTNENLPLVDYRRYSGVRKWTVGISGGKEMIAIIRASGSISRVKSPLTASSSGIIAEQFIEKIRRVRVSKQYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASLSDVAASGGYYMAMGAGTIVAERLTLTGSIGVVKGKFSLGKLYEKIGFNKDIISRGKYAEVLAAEQRPFRPDEAELFAKSAQHIYKQFRDKAAFSRSMTVDKMEEIAQGRVWAGEAAASCGLVDAIGGLSRAIAIAKLKANIPQDRQVTLVELSRPSLPEILSGIGTTLVGVDRTLKELLQDLTSDGVQARMDGIMFERMEGYPYPKTILTLMKDFLSSP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g1049 684 NCBIfam signal peptide peptidase SppA 387 600 IPR004635 GO:0006508|GO:0008233
Dere03g1049 684 Gene3D - 277 372 - -
Dere03g1049 684 Gene3D - 136 276 - -
Dere03g1049 684 SUPERFAMILY ClpP/crotonase 380 592 IPR029045 -
Dere03g1049 684 CDD S49_Sppa_N_C 387 601 IPR047272 -
Dere03g1049 684 Gene3D - 527 654 - -
Dere03g1049 684 CDD S49_SppA_67K_type 139 352 IPR047217 -
Dere03g1049 684 PIRSF Protease_4_SppA 79 683 IPR004634 GO:0006465|GO:0008233|GO:0016020
Dere03g1049 684 PANTHER PROTEASE 4 94 683 - -
Dere03g1049 684 SUPERFAMILY ClpP/crotonase 131 339 IPR029045 -
Dere03g1049 684 Pfam Peptidase family S49 455 605 IPR002142 GO:0006508|GO:0008233
Dere03g1049 684 Pfam Peptidase family S49 204 356 IPR002142 GO:0006508|GO:0008233
Dere03g1049 684 Gene3D - 382 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g1049 Dere-ChrDere03 16580093 16596997 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g1049 03 16580093 16596997 Dere14g0344 14 3532784 3549778 CCT
Dere03g1049 03 16580093 16596997 Dere03g1049 03 16580093 16596997 ECH