Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0729 ATGTTTCAGTCTCCGCAGGAATCCAGTAATTTCCAAATTTTCAGGAAGGGGAATTTGCATTACAGACTTTCTTCATCTCCAAACACTTCTACTACTCTGTTTTTGTGGCTCTCTCCTGCTCTGTTCTCTTGGAGGATGGCGAAACTTCCGAATATGCTGTCTTTGTGGAACTTGTTGGTGTTGTCGCTGGCTTTGAATGTGAGTTTGATACTGAGAATAGTGTATGAAAGCGACCAAGGCTACAAGGGATCTTCTTGCTTGAAGAAACAGAGGGATGGGCTTGCTGTTCACAAGGCACGTTTGGCCATATCTTCCTCCTCTTCCGTCTCTTTGAATTTGGCTAATTCCACTAGTGCCAATCATCCAGAAGTAAGGGAAAAAGTAATCAATCTCGACCACGGAGATCCGACAGTTTATGAAACATTTTGGCGACAAATGGGTGACAAGACGACAATTACAATCCCAGGATGGCAATCCATTAGCTATTTTTCCGATGCCACCAACATTTGTTGGTTTCTAGAGCCTGAGTTTGCGAAGGAGGTGGTGAGGCTGCACAATGTGGTTGGCAATGCCGTCACAGAAGATCGCCATATTGTCGTTGGGACAGGTTCCTCTCAGCTCTTTCTGGCTGCTCTGTATGCTCTGTCTCCCCGTGATGCAACCGAACCAATCAGCGTTGTATCCGCCGCACCATATTACTCGTCATACCCATCAATGACTGATTACCAGAAATCAGGACTGTACAAATGGGCTGGCGATGCAGAGAGTTTTGATAAAGAAGGACCCTACATTGAGCTTGTTACTTCCCCAAACAACCCTGATGGATATGTGAGGCGCTCTGTGGTCAACCGAAGCCAGGGATTATTGGTTCATGACCTTGCCTATTATTGGCCACAATACACTCCTATCTCATCCCCTGCTGATCATGAGCTAACCCTTTTCACTGTCTCTAAAAGCACTGGCCATGCAGGAATGCGAATAGGGTGGGCTCTGGTGAAAGACCAAGAGTTAGCCAAAAAAATGACTAAATTCATAGAGCTGAATACAATAGGTGTGTCAAAGGATTCGCAGCTCAGGGCTGCCAAGGTTTTAAGGGCAGTGTCTGATAGCTGCGAACAAGAAAGAAGCTCCCATGAGGGAGGAGAGTCATTCTTCAAGTTCAGCTACAACCTTATGGCTCAGAGGTGGAAGCAGCTGAGAGCAGCAGTTGAACGTAGTGGAATGTTCAGTTTGCCAAACTTCTCTCCTGCATTCTGCACCTTCTTCACCCAGGTCTTGGAGCCCCAACCTGCTTTTGTGTGGTTGAAGTGTGAGGGAGATATAGAGGACTGTGAGAGTTTCCTTCGAGGGCACAAGATCTTAACACGAAGTGGCAAGCACTTTGGAGTTAGCCCCAAGTATGTCAGAATTAGCATGCTGGACACAGACGAAAATTTCATTCAGTTTTTAGATAGATTGTCTGCCATACAGTCATGA 1476 0.4607 MFQSPQESSNFQIFRKGNLHYRLSSSPNTSTTLFLWLSPALFSWRMAKLPNMLSLWNLLVLSLALNVSLILRIVYESDQGYKGSSCLKKQRDGLAVHKARLAISSSSSVSLNLANSTSANHPEVREKVINLDHGDPTVYETFWRQMGDKTTITIPGWQSISYFSDATNICWFLEPEFAKEVVRLHNVVGNAVTEDRHIVVGTGSSQLFLAALYALSPRDATEPISVVSAAPYYSSYPSMTDYQKSGLYKWAGDAESFDKEGPYIELVTSPNNPDGYVRRSVVNRSQGLLVHDLAYYWPQYTPISSPADHELTLFTVSKSTGHAGMRIGWALVKDQELAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSCEQERSSHEGGESFFKFSYNLMAQRWKQLRAAVERSGMFSLPNFSPAFCTFFTQVLEPQPAFVWLKCEGDIEDCESFLRGHKILTRSGKHFGVSPKYVRISMLDTDENFIQFLDRLSAIQS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0729 491 Pfam Allinase 129 489 IPR006948 GO:0016846
Dere03g0729 491 Gene3D - 174 377 IPR015421 GO:0003824
Dere03g0729 491 CDD AAT_like 175 486 - -
Dere03g0729 491 Gene3D Aspartate Aminotransferase, domain 1 382 490 IPR015422 GO:0003824
Dere03g0729 491 SUPERFAMILY PLP-dependent transferases 98 487 IPR015424 -
Dere03g0729 491 Gene3D - 110 169 IPR037029 GO:0016846
Dere03g0729 491 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 131 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0729 Dere-ChrDere03 11658758 11663324 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0729 03 11658758 11663324 Dere14g0617 14 6491422 6494860 CCT
Dere03g0729 03 11658758 11663324 Dere03g0729 03 11658758 11663324 ECH