Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere03g0708 ATGGATCCCATCCCTGGAAGCTTCCCTCTTCTCTCCTCTTTCATGTCGCGTCTCCCTTCTCTCGCTCCCACTGCCTCTTCCAATTCAGATGTTTTCTACGACATCGAACAACCCCGCGTTCCTCCACCCTCCGATCCTTCTTCGTCCTCTTCTTCTTCTTCCGCAATCAAGATTCCGCAAGTTGGTGGCCAAATGCCTCATATCACCGATCCAAAACTGTTGGCCTCCATGACCCAAACCATCTACGACGTCGTGCAGACCCGATCCATGCTCAAGGTCCTCGGCGAACGGCCCGACCACGAATCCGTCGACAATGCGAAGGCGAAGCTGGCGGATCTGGAAGCCCATTTGTCCAGACAGCTGGAAGAGATCGTGCTGTCGCCCAGGCCTCCTAAAATTGACATCGTTCAATGGCGGAACCACCAGGCTGAGAAAGAGAAGGAGTGCAGGAAACTAGCGGAGGATGAGAAGCGAGTGTACAAAGCAGTGATACAACTGGATGAGATGCACGATGCGTATGAGAAATTGCTGAAGGACGCGGAGAAGAGATTGGTGGAGATTTACAAGTCCGTCGGCCACGACGGAGCAGAGGACGGCGAGGAAGAGAAGGTGGAGGCGGAGGCGGAGGAGGTGAATGAAGAGGTGGTTGGGATTCTGCAAAAGGCATATGGAATGGAGCGAATTGATCTTTCGAATCGAGGGCTGAAGTTGATTCCTGAGGCGTTTGGACGGATTTCTGGGTTGGTGGGGCTTATTGTTTCAACCAATCAGCTAACGGCGATTCCTGATTCAATAGCTGGATTGCAAAATCTTGAGGAGCTTAACGTATCTACAAATCATTTGGAGTCATTGCCGGATTCAATTGGCTTGTTACAAAATCTAAAACTGCTGAATGTCTCTGGAAACAAACTAAGTGCCCTTCCTGATTCCATCTGTCATTGCAGATCATTGGTGGAGCTGGATGCAAGCTTCAACACTCTCAGGTATTTGCCTACAAACATTGGACATGAATTACAGAACTTACGGAAACTCTTGATTCATTTGAATAAGCTTCGGTCGCTACCTTCATCTGTCTGTGAGATGAGATCCTTGCGCTATCTAGATGCCCATTTCAATGAGCTGCATGGACTTCCTAATGCAATAGGGAGACTGACTAATCTCGAGGTTCTCAACCTGAGCAGTAATTTCACTGACCTCAAAGAACTTCCTGAGACATTCTGTGATCTGATAAACCTCAAGGAGTTGGATCTCAGTAACAATCAGATTAGTGCACTTCCGGATACATTTGGTCGCCTTACCAATTTGACCAAACTCAACCTGGAGCAGAACCCTCTGGAAGTGCCACCAAACGAAATTGTAAAGCTAGGGGTTCAAGCTGTGAGAACTTATATGACCAACAGGTTGGTGAATATATTGAATGAGGAAGAAAGAAACAAGGTTGCAATGCAAGAACAAGCACAGATGGGGTGGTTAACGCGAAGCACCTCCTGGTTGAAGAGCTTTTCTGAAAGTGTTGCAGACTATGCCATAAGATCTCCTCGATCTCCCAGAGATGCTTATCTCGATGAGCAGCTATGA 1578 0.4797 MDPIPGSFPLLSSFMSRLPSLAPTASSNSDVFYDIEQPRVPPPSDPSSSSSSSSAIKIPQVGGQMPHITDPKLLASMTQTIYDVVQTRSMLKVLGERPDHESVDNAKAKLADLEAHLSRQLEEIVLSPRPPKIDIVQWRNHQAEKEKECRKLAEDEKRVYKAVIQLDEMHDAYEKLLKDAEKRLVEIYKSVGHDGAEDGEEEKVEAEAEEVNEEVVGILQKAYGMERIDLSNRGLKLIPEAFGRISGLVGLIVSTNQLTAIPDSIAGLQNLEELNVSTNHLESLPDSIGLLQNLKLLNVSGNKLSALPDSICHCRSLVELDASFNTLRYLPTNIGHELQNLRKLLIHLNKLRSLPSSVCEMRSLRYLDAHFNELHGLPNAIGRLTNLEVLNLSSNFTDLKELPETFCDLINLKELDLSNNQISALPDTFGRLTNLTKLNLEQNPLEVPPNEIVKLGVQAVRTYMTNRLVNILNEEERNKVAMQEQAQMGWLTRSTSWLKSFSESVADYAIRSPRSPRDAYLDEQL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere03g0708 525 SMART LRR_typ_2 432 455 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 315 337 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 291 314 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 268 290 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 384 408 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 409 431 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 338 361 IPR003591 -
Dere03g0708 525 SMART LRR_typ_2 245 267 IPR003591 -
Dere03g0708 525 ProSiteProfiles Leucine-rich repeat profile. 293 314 IPR001611 GO:0005515
Dere03g0708 525 PANTHER - 226 347 - -
Dere03g0708 525 Coils Coil 163 183 - -
Dere03g0708 525 Gene3D Ribonuclease Inhibitor 139 327 IPR032675 -
Dere03g0708 525 FunFam Plant intracellular Ras-group-related LRR protein 9 145 329 - -
Dere03g0708 525 Coils Coil 103 123 - -
Dere03g0708 525 SMART LRR_bac_2 409 428 - -
Dere03g0708 525 SMART LRR_bac_2 245 264 - -
Dere03g0708 525 SMART LRR_bac_2 384 405 - -
Dere03g0708 525 SMART LRR_bac_2 361 380 - -
Dere03g0708 525 SMART LRR_bac_2 291 310 - -
Dere03g0708 525 SMART LRR_bac_2 268 287 - -
Dere03g0708 525 SMART LRR_bac_2 314 333 - -
Dere03g0708 525 SMART LRR_bac_2 338 357 - -
Dere03g0708 525 PRINTS Leucine-rich repeat signature 412 425 - -
Dere03g0708 525 PRINTS Leucine-rich repeat signature 432 445 - -
Dere03g0708 525 FunFam Plant intracellular Ras-group-related LRR protein 2 333 505 - -
Dere03g0708 525 Pfam Leucine rich repeat 270 327 IPR001611 GO:0005515
Dere03g0708 525 Pfam Leucine rich repeat 403 445 IPR001611 GO:0005515
Dere03g0708 525 ProSiteProfiles Leucine-rich repeat profile. 411 432 IPR001611 GO:0005515
Dere03g0708 525 SUPERFAMILY L domain-like 219 446 - -
Dere03g0708 525 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
Dere03g0708 525 MobiDBLite consensus disorder prediction 23 63 - -
Dere03g0708 525 Coils Coil 201 221 - -
Dere03g0708 525 Gene3D Ribonuclease Inhibitor 328 457 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere03g0708 Dere-ChrDere03 11390437 11393371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere03g0708 228 454 Receptor kinase-like Gene Family AT5G46330 27.615 1.81e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0708 03 11390437 11393371 Dere14g0630 14 6656182 6660796 CCT
Dere03g0708 03 11390437 11393371 Dere03g0708 03 11390437 11393371 ECH