Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g3396 ATGGAGCTCGCAAAAATGGAGACTACTCAACATTATGATGACAAAGTGAGAGTTCTTTATGAGGCATCATATACAGGGTGTGTTTCAACTTTGAACTCACTGATACAGCAAGACCCACTAATCTTATACAAAATTAGCTCACAAACCGTCTTCATTGAAACTCCCTTACACGTATCAGCTTCGCTTGGCCACTTTGAATTCACAAAGGCCCTTCTTACCCACAAACCCCAACTTGCTGTTGAGTTGGACTCCTTCAGAAGCACAGCCCTCCACCTGACTTCCGCTGAGGGCCATGTGGACATCGTGAAAGAGTTGTTGGTAGCTTATGACCAAGCATGCTTGATTGCTGATCAAGAAGGAAGAATTCCCTTACACTACGCAGTTATCAGAGGGAGAATAGAGGTTGTGAGGGAGCAGGTTAGAGCGAAGCCAGAATGTTTGAGGATCATCGACGTCAAAGGGAAAACTGTTTTCCACTTATGTGTGGCATACAACCACTTGGATATCCTTAAAGCGTTGGTGGAATCAGATATTGACAACACCAGCGAGCTCCTCAACTCGAGAGACTTGGATGGCAAGAACACTGTTTTCCACTTGGCTATCATGTTAAAGCAAGTTGAGACGGTAAGGTACCTTCTTTCAATTCCCAAAGTGAAAGAGGGATCAAACTTGGAGAATGGCATGGGTTTTACAGCCCATGATTTTGTAGAGCAAATTCCAAGAGACTTGAAAAGCCTTGAAATACAAGATGGTGATGTATGTCCTGGAGAAGCATTGCTTGCTTCTGCTAACTCGGGGGATTTTTTCTACTTCATAATTTTCAATACCACCTCCTTTGTTGCATCTCTTGCTGTTACCCTCTTGCTTGTTAGTGGAGTTCCCCTGGAAAATAAATTGATGGTGTGGATGCTATCTATAGGCATGTGTATCACTCTCACGTCCTTAGCATTAACCTACTTTAATGGCCTCTCCTTGATGACCCCAGATGGTCTTTGGGATTCAACTTCTAAAGTGTCCAAAATATCCATTCGCTTTTGGGTTGGATTGCTTGGGCTTATTGGTTTATACATCGCAATCCGCTTTGCCATATGGGCAATGGTGTCTGTAGCTTCATCTTCATCGTTTTTCTCTGCCCTTACACATTCGCTCATACCTCTGAAGGGTAGAAGAAACAGAACTACAAAGTCCAATTTTTTGAGGATGATCACTCGCTCGTGTCTTGATGACAGTTCCTCTCTCATTCAAGCAGCGCAATACACCGTGGATACATACGTAAAAAGTGGCATGGTCATTGGACTGGGGTCTGGTCAGGCTTCTGGTATGGCCATTCGGCATTTGGGTCGGCAGCTACGTACTGGTGCTTTAAAGGATGTACTAGGGATCCCTATGTCTGTCACAAGTGCTAGTGAGGCTGCAAAGGCAGGAATTCCATTGGATAGCTACCAAGAGAGCTCTCAAATTGATTTTGCATTTGATGATGCTGATGTTATAGAAGAAGGATCACTTATTGCAATCATTGGGCGCCGGAAATTGCAAGGCGAGGAATCCATAGTTGAAATGAAGTCCATACTGAATGCTGCCAATAAACTTGTATATATTATTGAAGAAAACCAGTACAGAGGCGGTCTGGGAGGTTCTATTCCTGTTTTAGTTCAGTCTCTCAACTGGTTGGAAACTGCTGAAGAGATTGATGATATGTTTTTGGGTGATGCCGAGGTCTGGAGAAGACCATCTATAGGGCAAGCGGGTCCCCTAGGAGGTGACTTCCCACTAGTTACCAGAGAAGGACATAATGTGCTTGATGTTATTTTTACATCTCCAATTGTAAGCCTTGCTGAAGTGGCAGAAAGCCTTGATAAAGTTAAAGGTGTTGTGGAGCATGGGGTCATTTCTAAATTTCCATGCACAGTGGTAATTGCCTCCCAGAATGGACTTAACGTTGTGGACAAATTGACCGAAAATGTATTGGGATAG 1974 0.4367 MELAKMETTQHYDDKVRVLYEASYTGCVSTLNSLIQQDPLILYKISSQTVFIETPLHVSASLGHFEFTKALLTHKPQLAVELDSFRSTALHLTSAEGHVDIVKELLVAYDQACLIADQEGRIPLHYAVIRGRIEVVREQVRAKPECLRIIDVKGKTVFHLCVAYNHLDILKALVESDIDNTSELLNSRDLDGKNTVFHLAIMLKQVETVRYLLSIPKVKEGSNLENGMGFTAHDFVEQIPRDLKSLEIQDGDVCPGEALLASANSGDFFYFIIFNTTSFVASLAVTLLLVSGVPLENKLMVWMLSIGMCITLTSLALTYFNGLSLMTPDGLWDSTSKVSKISIRFWVGLLGLIGLYIAIRFAIWAMVSVASSSSFFSALTHSLIPLKGRRNRTTKSNFLRMITRSCLDDSSSLIQAAQYTVDTYVKSGMVIGLGSGQASGMAIRHLGRQLRTGALKDVLGIPMSVTSASEAAKAGIPLDSYQESSQIDFAFDDADVIEEGSLIAIIGRRKLQGEESIVEMKSILNAANKLVYIIEENQYRGGLGGSIPVLVQSLNWLETAEEIDDMFLGDAEVWRRPSIGQAGPLGGDFPLVTREGHNVLDVIFTSPIVSLAEVAESLDKVKGVVEHGVISKFPCTVVIASQNGLNVVDKLTENVLG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g3396 657 Pfam Ankyrin repeats (3 copies) 56 137 IPR002110 GO:0005515
Dere02g3396 657 SUPERFAMILY Ankyrin repeat 14 236 IPR036770 -
Dere02g3396 657 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 546 629 - -
Dere02g3396 657 SUPERFAMILY NagB/RpiA/CoA transferase-like 416 554 IPR037171 -
Dere02g3396 657 Gene3D - 416 644 - -
Dere02g3396 657 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 402 650 - -
Dere02g3396 657 Pfam Ankyrin repeats (many copies) 156 213 IPR002110 GO:0005515
Dere02g3396 657 Gene3D - 3 236 IPR036770 -
Dere02g3396 657 Pfam Domain of unknown function 255 324 IPR026961 -
Dere02g3396 657 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 460 644 IPR004788 GO:0004751|GO:0009052
Dere02g3396 657 SMART ANK_2a 85 113 IPR002110 GO:0005515
Dere02g3396 657 SMART ANK_2a 51 80 IPR002110 GO:0005515
Dere02g3396 657 SMART ANK_2a 119 148 IPR002110 GO:0005515
Dere02g3396 657 SMART ANK_2a 153 183 IPR002110 GO:0005515
Dere02g3396 657 SMART ANK_2a 192 221 IPR002110 GO:0005515
Dere02g3396 657 Gene3D - 542 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g3396 Dere-ChrDere02 43134856 43144770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g3396 22 238 Miscellaneous Gene Families AT4G10720 30.667 8.16e-25 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g3396 02 43134856 43144770 Dere02g2830 02 31867785 31869678 CCT
Dere02g3396 02 43134856 43144770 Dere02g3396 02 43134856 43144770 ECH