Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g2610 ATGCAGCGTTTGCCAGCCAAATTGTGCCGTAACATTGCACGTCCGGCGTGCGACGTCTTCATCAACCACCGCTGCATCGACACGAAGCGGAACGTCGCCGGACTGCTCTACCACCGCCTCACCGACATGGGCGTGCGGTCGTTCCTGGACAGCATGAACATGAAACCAGGGGATCGGCTCTTTGATCATATTGACAAGGGCATTCTGGGTTGTAAGGTCGGCGTCGCCGTATTCAGCCCTCGTTACTGCGAGTCGTATTTCTGCCTCCATGAGCTCGCGCTTCTCATGGAGTCGAAGAAGAGAGTGGTTCCTATCTTCTTCGACGTCAAGCCTTCGCAGCTTCAGGTTCGGGACAATGGAGCTTGTCCGGCGAAGGAGCTTCAGAGGTTCAGAGTCGCTCTTGAGGAAGCCAAGTACACTGTGGGATTGACCTTCGACCCTGTGAAAGGGGACTGGTCGGAACTACTAAGGGATGCTTCAGAAGCAGTAATTACGAACTTGCTGGAGGTTGAAGAAGAGCGAAAGAGTTCGAGGCAATTACATGAATAA 549 0.5355 MQRLPAKLCRNIARPACDVFINHRCIDTKRNVAGLLYHRLTDMGVRSFLDSMNMKPGDRLFDHIDKGILGCKVGVAVFSPRYCESYFCLHELALLMESKKRVVPIFFDVKPSQLQVRDNGACPAKELQRFRVALEEAKYTVGLTFDPVKGDWSELLRDASEAVITNLLEVEEERKSSRQLHE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g2610 182 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 178 - -
Dere02g2610 182 Gene3D - 13 171 IPR035897 -
Dere02g2610 182 ProSiteProfiles TIR domain profile. 15 138 IPR000157 GO:0007165
Dere02g2610 182 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 140 IPR035897 -
Dere02g2610 182 Pfam TIR domain 19 112 IPR000157 GO:0007165
Dere02g2610 182 SMART till_3 16 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g2610 Dere-ChrDere02 29005144 29005875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g2610 12 146 Miscellaneous Gene Families AT1G57670 28.188 7.57e-14 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g2611 02 29061067 29062178 Dere02g2610 02 29005144 29005875 CCT
Dere02g2610 02 29005144 29005875 Dere02g2610 02 29005144 29005875 ECH