Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1420 ATGGCTATCCAGGGGCATCTCCTATCATTCTCCTTCATCATCATTTCTTTCGTTGCTTGCTATTGCACTTTGCAAGAGGACCCACATAATATTTACGTTGATTATTCACCTAATTCCATTGATGACGGCGGGACTTTCAAGAACTTGATCAAGCAAAGCTCAGATATTTTGAGGTTGAAGAGTTTTGATAGATTGGTTGGCTCCTCTACTTCACAAAACGCAGTTTACGTCAATGATTATGGAGCAGAAGGGGATGGTACTACTGACGACACACTGGCATTCAAGAAGGCTTGGGAAGTTGCATGCTCTTCTGGGGAAGCAGTTTCTCTTGTGGTGCCAAGTCAGAATTATCTACTCAAGCCAATCAGATTCTCTGGCCCTTGCAAATCGAACATCACTGTGCAGATCTCTGGGGTGCTTGAAGCGTCAGATAATCGTTCAGATTACAGCCAACATCCCACACACTGGCTTATGTTTGACAGTGTCCAGAGGCTATCAGTTCAAGGTGACGGAACCCTCAATGGAAATGGACACATATGGTGGCAAAACTCATGCAAAAGGAGGAAAAAACTCCCTTGCAAGAATGCCCCCACGGCTCTGACATTCCATAAGTGCCAGAATTTGGTGGTGGAGAAGTTGACGATAAAAAATGCCCAACAAATTCATGTGTCGTTCCAGGACTCCAAGTACGTTCGAGCTTCAGGCCTCACCGTGACTGCACCAGAGGATAGTCCTAACACCGATGGAATTCATGTCACCAATACCCAAAACATCCAAATCTCACGCTCTGTTATAGGAACTGGAGATGATTGTATATCAATTGTAAGAGCATCCCGGAATGTACAAGCCACGAATATAACCTGCGGACCAGGCCATGGTATCAGTATCGGAAGCTTAGGGGCCAAAAAAGCCAGGGACTATGTTTCCGGCATAACAGTGAATGGAGCTAAGTTTTCTGGAACTACCAATGGAGTCAGAATCAAGACATGGCAGGGTGGGTCAGGAACTGCAAGCAACATCAAGTTCCAGAACATAGAAATGAACAAGGTGACGAACCCCATAATAATAGACCAGAACTACTGTGACCAAAAGACCCCATGCGAACAACAGCACTCAGCGGTTCAGATTAAGAATGTGTTGTTCCAGAACATTAAAGGTACGAGTGCTTCAGAAGTGGGTGTGAAGTTCGATTGCAGCGAGAGCTTTCCATGCCAGGGAATTGTAATGGAGAACATAAACCTGCGACTCCACACAGGAGAAACTGCCGAGGCTTCATGTAACAATGTTCAGGTGTCCTATATTGGAGATGTTAGCCCTCGCTGCCCATCAAATAACACGAAGACATTGTCTGATTACTGA 1359 0.4525 MAIQGHLLSFSFIIISFVACYCTLQEDPHNIYVDYSPNSIDDGGTFKNLIKQSSDILRLKSFDRLVGSSTSQNAVYVNDYGAEGDGTTDDTLAFKKAWEVACSSGEAVSLVVPSQNYLLKPIRFSGPCKSNITVQISGVLEASDNRSDYSQHPTHWLMFDSVQRLSVQGDGTLNGNGHIWWQNSCKRRKKLPCKNAPTALTFHKCQNLVVEKLTIKNAQQIHVSFQDSKYVRASGLTVTAPEDSPNTDGIHVTNTQNIQISRSVIGTGDDCISIVRASRNVQATNITCGPGHGISIGSLGAKKARDYVSGITVNGAKFSGTTNGVRIKTWQGGSGTASNIKFQNIEMNKVTNPIIIDQNYCDQKTPCEQQHSAVQIKNVLFQNIKGTSASEVGVKFDCSESFPCQGIVMENINLRLHTGETAEASCNNVQVSYIGDVSPRCPSNNTKTLSDY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1420 452 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Dere02g1420 452 Gene3D - 64 449 IPR012334 -
Dere02g1420 452 SMART pbh1 308 329 IPR006626 -
Dere02g1420 452 SMART pbh1 371 411 IPR006626 -
Dere02g1420 452 SMART pbh1 337 358 IPR006626 -
Dere02g1420 452 SMART pbh1 255 276 IPR006626 -
Dere02g1420 452 SMART pbh1 205 254 IPR006626 -
Dere02g1420 452 PANTHER - 74 429 - -
Dere02g1420 452 Pfam Glycosyl hydrolases family 28 102 431 IPR000743 GO:0004650|GO:0005975
Dere02g1420 452 FunFam Polygalacturonase QRT2 62 442 - -
Dere02g1420 452 SUPERFAMILY Pectin lyase-like 74 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1420 Dere-ChrDere02 13681132 13683963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1420 1 443 Glycoside Hydrolase AT2G41850 52.915 2.19e-153 441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1420 02 13681132 13683963 Dere01g2444 01 38972609 38974890 CCT
Dere02g1420 02 13681132 13683963 Dere02g1420 02 13681132 13683963 ECH