Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2444 ATGGCCCTCCAAAGACATATCCTTTCATCCTTCATCATCATGATCATTCCTTTTGTCGCTTGTTATGGTACTTCGCAAGAGGAGTCTCTTAATATACATGTTGGTGACTCACCCTCCAATACTGATGATGGTGGGGCATTCAAAAACTCGATCATCCAGCAAAGCACAAAAGTTTTGAGCTTAAATAGGTTTATCAAGTTGGGTGTCGTTTCTCCTTCAGTTAAAAAGGTTAATGTCAATGATTATGGAGCTAAAGGGGACGGTAAAAGCGATGACACAGAGGCATTTAAGAGGGCTTGGGAAGTAGCATGTTCTTCTGGACAAGCTGTAATTCTCGTGGTGCCTCCTAATAACAATTATCCACTCAAGTCTGTCGCATTCTCTGGCCCATGCAAATCTAACATTGCTATCCAGATTTCTGGGACACTTGAAGCATCAGAGAACCCATCGGACTACTCTCAGGACACCCCACACTGGCTTATGTTTGAGAGTGTTCAGAAACTAACAGTCCATGGAGGTGGAACCATCAATGGAAATGGAAACATATGGTGGCAAAACTCTTGCAAAAAGAACCCAAATCTCGCTGTTACTTTTTTTAAGTGCGAGAATATGATACTAGAGAACTTGACGATAAAAAATGGGCAACAAATCCACGTTAATTTCCAGGACTCCGCAAATGTTAAGGTTTCTGGTGTCACAGTGAGCGCACCTGAGGATAGCCCTAACACCGACGGAATTCATGTCACCAATACAGAAAACATTCGAATCTCAAACTCTCTTATAGCGACAGGAGATGATTGTATATCAATTGAAAGTGGAACCCAGAATTTAGTAGCCACAAGTATAACATGTGGACCAGGCCATGGTATCAGTATCGGAAGCTTAGGGGAGACAGGATCCAAGGAAGTTGTGTCAGGAATAACAGTGAATGGTGCTAAGCTTTCCGGAACTACAAATGGAGTTAGAATTAAGACGTGGCCGGGAGGTTCAGGAAGTGCAAGCAACATCAAATTTCAAAATATTGTCATGCACAATGTGGCTAACCCCATAATAATCGACCAGAACTACTGTGACCAGAAGAATCCATGCAAAGAAGAGAACTCGGCAGTTGAGATAAAAAATGTGTTGTACGAGAACATAAAAGGAACGAGTGTTTCTGATGTTGCTGTGAGCTTGGGTTGCAGTCAGAGGTTTCCATGTGAGGGGATTGTGTTGCAGAACATAGAGCTGCAACGTGAAGGAGGAGAGACTTCCAAAGCTTTATGTGAAGGTGCTGTATTGTCTTACTTAGGAGACGTTTCCCCTCGTTGCCCATAG 1317 0.429 MALQRHILSSFIIMIIPFVACYGTSQEESLNIHVGDSPSNTDDGGAFKNSIIQQSTKVLSLNRFIKLGVVSPSVKKVNVNDYGAKGDGKSDDTEAFKRAWEVACSSGQAVILVVPPNNNYPLKSVAFSGPCKSNIAIQISGTLEASENPSDYSQDTPHWLMFESVQKLTVHGGGTINGNGNIWWQNSCKKNPNLAVTFFKCENMILENLTIKNGQQIHVNFQDSANVKVSGVTVSAPEDSPNTDGIHVTNTENIRISNSLIATGDDCISIESGTQNLVATSITCGPGHGISIGSLGETGSKEVVSGITVNGAKLSGTTNGVRIKTWPGGSGSASNIKFQNIVMHNVANPIIIDQNYCDQKNPCKEENSAVEIKNVLYENIKGTSVSDVAVSLGCSQRFPCEGIVLQNIELQREGGETSKALCEGAVLSYLGDVSPRCP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2444 438 Gene3D - 69 431 IPR012334 -
Dere01g2444 438 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Dere01g2444 438 SMART pbh1 333 354 IPR006626 -
Dere01g2444 438 SMART pbh1 201 221 IPR006626 -
Dere01g2444 438 SMART pbh1 224 250 IPR006626 -
Dere01g2444 438 SMART pbh1 304 325 IPR006626 -
Dere01g2444 438 SMART pbh1 251 272 IPR006626 -
Dere01g2444 438 PANTHER - 76 422 - -
Dere01g2444 438 Pfam Glycosyl hydrolases family 28 104 419 IPR000743 GO:0004650|GO:0005975
Dere01g2444 438 FunFam Polygalacturonase QRT2 65 438 - -
Dere01g2444 438 SUPERFAMILY Pectin lyase-like 71 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2444 Dere-ChrDere01 38972609 38974890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2444 5 437 Glycoside Hydrolase AT3G57510 50.446 1.14e-144 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1420 02 13681132 13683963 Dere01g2444 01 38972609 38974890 CCT
Dere01g2444 01 38972609 38974890 Dere01g2444 01 38972609 38974890 ECH