Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1419 ATGGCCATGGCTGCTTCTCGGAGAAACGACATGCTTTATCCAAACTTTCACAAGTTTTGGGAAGTGTTGAAAGATATGACGGTGACACCTAATTTATCCCTTAATGATGGGAACTTGGTGGTCCACGGAAAGACCATACTGACAGGAGTACCTGACAACATTGTGCTCACTCCTAGACCTGGAAATGGGCTTGTTACTGGTGCATTTGTTGGTGCCACATCTTCCCACTCCAAAAGCCTCCACGTGTTTCCTATGGATGTCTTTGAGTTCATCAGTTGTTTCGGGTTCAAGTTATGGTGGATGACTCATAGAATGGGAACTTGTGGGAAAGATGTGCCTCTGGAGACCCAATTCATGCTTATAGAGACCAAAGAAGATAATTCTGGAACCATCTACACAGTGTTGCTTCCTCTGCTGGAAGGCCAGTTCCGAGCTGTTCTACAAGGCAATCCCAAAAATGAGTTAGAGATTTGCCTAGAGAGTGGAGATAACACTGTTGAGACCAATCAAGGGCATCACTTGGTCTACATGCATGCTGGGACCAATCCCTTTGAAGTCATCAACCAATCCGTCAACTACCATCTTTTCTTGACTGGTTTGGCTGGTGCACTTGGGATGCTTTCTATACCGATGTCACTGTTCGCTAGCAGATTGACTGGCATAAAGGAGAAGACTAAATTTCAAAAGAGCGGGCAGAACAATGAACAGAACTCTGGTCTGAAGCATGTTGTAGATGAATCAAAACACCGTTACAATGTCAATTTGCTGAAGATATGGAACATGAACAAATGCAGTGGAGTGGTAGGTGTATTTAATTGCCAAGGTGTAGGGTGGTGCAAGATAGAAAAGAAGACCCGTATCCACAATGCATCTCCTGGTACTCCTTCTGGCTCTGTTTCTGCCTCTGATGTTGACCTCATCGCTCAGGTTGCTAGTACCCATTGGGATGGCCAAACTATTGTTTATGCTTACAAATCAGGGGAGGTAAATAGGGTACCAAAGGGGGCTTCGGTGCCTGTAACACTTCAAGTTCAGGAGTATGAACTGTTCCATTTCTGTCCAATCCAAGAAATCGCACCAGGTGTTTCATTTGCAGCGATAGGGCTAATGGACATGTTCAACAGTGGAGGAGCAGTAGAGGCATTTGAGGTCCACAAAAACCCAGAAAAATCAGCAAGGGCAAGTATAGGATTGAGAGTGAAGGGAAGTGGCAGATTTGAAATGTACTGCTCCCAGAGGCCTCTCAAGTGTGAGCTAATCAACACCACCATGCATGTTGCTTTCTTCTTCTTAATAAAGCTCGCTGATCTTTTCCCGGCTTTTCCGTGTCTGCAGATTATTGGATTCATCTCCTTTCCTACTACCATAAATCGTTGTAATTGA 1383 0.4469 MAMAASRRNDMLYPNFHKFWEVLKDMTVTPNLSLNDGNLVVHGKTILTGVPDNIVLTPRPGNGLVTGAFVGATSSHSKSLHVFPMDVFEFISCFGFKLWWMTHRMGTCGKDVPLETQFMLIETKEDNSGTIYTVLLPLLEGQFRAVLQGNPKNELEICLESGDNTVETNQGHHLVYMHAGTNPFEVINQSVNYHLFLTGLAGALGMLSIPMSLFASRLTGIKEKTKFQKSGQNNEQNSGLKHVVDESKHRYNVNLLKIWNMNKCSGVVGVFNCQGVGWCKIEKKTRIHNASPGTPSGSVSASDVDLIAQVASTHWDGQTIVYAYKSGEVNRVPKGASVPVTLQVQEYELFHFCPIQEIAPGVSFAAIGLMDMFNSGGAVEAFEVHKNPEKSARASIGLRVKGSGRFEMYCSQRPLKCELINTTMHVAFFFLIKLADLFPAFPCLQIIGFISFPTTINRCN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1419 460 Pfam Raffinose synthase or seed imbibition protein Sip1 254 423 IPR008811 -
Dere02g1419 460 Pfam Raffinose synthase or seed imbibition protein Sip1 33 192 IPR008811 -
Dere02g1419 460 PANTHER - 254 421 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1419 Dere-ChrDere02 13669350 13674175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1419 214 260 Glycoside Hydrolase AT3G57520 57.447 2.49e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2446 01 38999158 39005604 Dere02g1419 02 13669350 13674175 CCT
Dere02g1419 02 13669350 13674175 Dere02g1419 02 13669350 13674175 ECH