Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2446 ATGGTTCTTCATCCTACCTCCGAACACTTCGTTCCGGCGGCGGATACCGTACTCAAGTGTTCAAAGATGACGATCACACCTAATATCTCCGTTAACGATGGGAACCTGGTTGTCCATGGGAAGACCTTACTTACTGGAGTACCAGACAACATTATACTGACCCCAGGATCTGGGGTGGGCCTTGTTGATGGTGCATTTGTTGGTGCCATGGCTTCCCACAGTAAAAGTCTCCATGTCTTCCCCATGGGCGTCTTAGAGGGTCTCCGGTTCACGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATATCCCTTTGGAGACCCAATTCATGCTGATTGAGAGCAAAGATGGCGGAGCTGCTATGCAGGAGAATTCTTCGACCATCTACACTGTCTTGCTTCCTCTCCTGGAAGGCCCATTCCGCGCTGTTCTACAAGGAAATGACAAAAATGAGATAGAGATTTGCCTTGAGAGTGGAGACAATGCTGTTGAGACTAATCAAGGTCTTCTACTGGTCTACATGCATGCTGGGACTAATCCCTTTGAAGTCATTAACCAAGCTGTCAAGGCTCTGGAAAAACACATGAAAACATTCGTTCATCGTGAGAAGAAAAAATTACCATCTTTTCTGGACTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACTGCCGAGGGGGTTGAGGAAGGACTGCGAAGCCTATCAGAGGGTGGCACCCCACCACGCTTCCTCATCATAGATGATGGCTGGCAACAGATTGAAAGTAAACCAAAGGATGCTGATTGTGTCGTACAAGAAGGAGCACAGTTTGCTAGTAGGTTGACTGGTATAAAAGAAAACACTAAATTTCAGAAGAATCGACAGAACAATGAACAGAATCCAGGCCTGAAGCATGTTGTAGATGAAGCAAAGCAACATCACAATGTGAAGTATGTTTATGTATGGCATGCTCTAGCTGGTTATTGGGGTGGTGTGAAGCCAGCAGCTAGCGGCATGGAACATTATGACACTGCCTTAGCATACCCAGTGCAGTCTCCAGGTGTACTAGGAAACCAACCAGATATTGTCATGGACAGCTTGGCTGTACATGGCCTAGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAATGAGCTCCATGCTTACTTAGCTTCATGTGGAGTAGATGGAGTAAAAGTTGATGTTCAGAACATTATCGAGACCCTTGGTGCTGGACATGGTGGCAGAGTTGCACTCACTCGCAGCTATCATCAGGCCCTTGAGGCCTCTATTGCTCGTAACTTTCCTGATAATGGATGCATTGCGTGTATGTGTCACAATACTGATGGGCTTTATAGTGCCAAGCAGACTGCTGTTGTGAGAGCATCTGACGACTTTTACCCACGTGATCCGGCTTCCCACACTATTCATATATCATCTGTAGCATACAACACACTCTTCCTTGGAGAATTCATGCAGCCTGACTGGGATATGTTCCATAGTTTACACCCAGCTGCGGAGTACCATGCTGCAGCTCGTGCAGTTGGTGGATGTGCAATTTATGTCAGCGATAAGCCAGGCAACCACAATTTTGAACTTCTCAAGAAGCTGGTTCTGCCTGATGGATCTGTTCTCCGTGCTCAATTGCCAGGCAGGCCCACCCGTGATTCTCTCTTTACTGATCCAGCTAGAGATGGGACTAGCTTGCTCAAAATATGGAACATGAACAAATGCTCTGGAGTGGTTGGTGTATTTAACTGTCAAGGTGCTGGGTGGTGCAAAATAGAGAAGAAGACTCGTATCCATGATGCATCTCCTGGTACACTCACGGGCTCTGTTTGCGCCTTTGATGTCGACCTCATCTCTCAAGTTGCTGGCGCCGATTGGGATGGCGACTCTATTGTTTATGCCTATAAATCAGGTGAGGTAATTGGGCTACCAGAAGGTGCTTCGTTGCCAGTAACACTGAAAGTGCTGGAGTATGAACTTTTCCATTTCTGTCCTGTCAGGAAAATTGCACCAAGTATTTCGTTTGCACCTATAGGGCTACTGGACATGTTCAACACTGGAGGAGCCATTGAGCAGGTCGAAATCCACAAAGCTTGTGACAAAGATCAACAACTATTTGATGGTGAGGTTCAGACTCAGCTGACCACTTCTCTCAGTTCTCACCGATCAGCAACGGCAACTATTGCCCTCAGAGTAAGAGGAAGTGGCAGAGTTGGAGTGTACTCCTCCCAGCGTCCATTGAAGTGTGTTGTAGGCGACACTGAAACCGATTTCAACTATGACTCAGCCAATGGGTTGGTGAGCTTCACCATCCCACTTGCATCAGAGGAAATGTACAGATGGCCCATTGAGATCCAAGTTTGA 2391 0.4705 MVLHPTSEHFVPAADTVLKCSKMTITPNISVNDGNLVVHGKTLLTGVPDNIILTPGSGVGLVDGAFVGAMASHSKSLHVFPMGVLEGLRFTCCFRFKLWWMTQRMGTCGRDIPLETQFMLIESKDGGAAMQENSSTIYTVLLPLLEGPFRAVLQGNDKNEIEICLESGDNAVETNQGLLLVYMHAGTNPFEVINQAVKALEKHMKTFVHREKKKLPSFLDWFGWCTWDAFYTDVTAEGVEEGLRSLSEGGTPPRFLIIDDGWQQIESKPKDADCVVQEGAQFASRLTGIKENTKFQKNRQNNEQNPGLKHVVDEAKQHHNVKYVYVWHALAGYWGGVKPAASGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVALTRSYHQALEASIARNFPDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHAAARAVGGCAIYVSDKPGNHNFELLKKLVLPDGSVLRAQLPGRPTRDSLFTDPARDGTSLLKIWNMNKCSGVVGVFNCQGAGWCKIEKKTRIHDASPGTLTGSVCAFDVDLISQVAGADWDGDSIVYAYKSGEVIGLPEGASLPVTLKVLEYELFHFCPVRKIAPSISFAPIGLLDMFNTGGAIEQVEIHKACDKDQQLFDGEVQTQLTTSLSSHRSATATIALRVRGSGRVGVYSSQRPLKCVVGDTETDFNYDSANGLVSFTIPLASEEMYRWPIEIQV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2446 796 Gene3D Aldolase class I 220 536 IPR013785 -
Dere01g2446 796 PANTHER - 23 793 IPR008811 -
Dere01g2446 796 Pfam Raffinose synthase or seed imbibition protein Sip1 29 779 IPR008811 -
Dere01g2446 796 SUPERFAMILY (Trans)glycosidases 218 548 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2446 Dere-ChrDere01 38999158 39005604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2446 23 579 Glycoside Hydrolase AT3G57520 82.765 0.0 982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2446 01 38999158 39005604 Dere02g1419 02 13669350 13674175 CCT
Dere01g2446 01 38999158 39005604 Dere01g2446 01 38999158 39005604 ECH