Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1314 ATGCTTAGCGTGCTACGCGTGCACCTCCCGTCTGATATACCCATTGTAGGCTGTGAGCTCACGCCATACGTGCTCATACGGCGACCCGATAAGATTGTTACCACCGACGATGTCCCTGAGACGGCCCCTTTAGATGGCCATTTCTTGCGGTACAGGTGGTATCGTGTACAAAGTGATAAAAAGGTTGCTGTCTGTAGCATTCACCCATCTGAGCAGGCCACATTGCAGTGTGTGGGCTGTATTAAGGCCAAAATACCTGTTGCGAAAAGTTATCATTGCACACCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTCTCCTACATGACCGGGCTGCAAGTGCAGTTAATGAAAATGGAGCTGATGAGGAGGAAATATTTGGACGTTATAATAGTTCTGGGTCTGGGGTAATTAATACCAGTTTATCTGGCTCTGCATCTAGTGCTAGCTTGGCAAATGTGTCAACACCTCTGTATCCAGCTGCTGTTACACAACGCAGTGGTGGTGAAACTTGGATTGAAGTAGGAAGATCTAAAACATATACCCCAACAGCTGATGACATTGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAAGTTCCTGTGGGGCATGTGAATACCATACTAACTTCTCGTGTTATTCCTGCTCCCTCTCCTATTCCCCGCCGTTTGATCCCTGTTGATGGGATGGCACACATAGATGCAGATGCACGCATAACATCTTCAGGAACATTTACTGTTCTATCATACAACATATTGTCTGATGCATATGCCTCAAATGATTTATACGGTTACTGCCCTTCATGGGCTCTTTCTTGGCCATACCGCAGGCAAAATTTGTTAAGAGAAATAGTAGGTTACCGTGCAGATATTATATGTCTTCAGGAGGTACAAAGTGATCATTATGAGGAATTTTTTGCTCCTGAACTGGACAAACATGGTTATTATGGTCTATACAAGAGAAAAACTAATGAGGTATTCAGTGGCAGCACCAACACTGTTGATGGATGTGCAACATTTTTCCGTAGAGATAGATTTTCGCATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACTGATGCTATGATTCCAACCACACAGAAGAAAAATGCGTTGAATCGGCTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCTAAAGTTAACAATCATGTAGTTGACAGTCCTGGGAAAAGACAACTTCTTTGTGTGGCAAATACCCATGTAAATGTCCACCAAGATTTAAAAGATGTTAAACTCTGGCAGGTCCATACTCTCTTAAAAGGGTTGGAGAAAATTGCTGCAAGTGCAGACATTCCAATGTTGGTGTGTGGAGATTTTAATTCGGTTCCTGGAAGTGCTCCTCATTCTCTTCTTGCATTGGGGAAGGTAGACCAAACGCATCCAGATTTAGCAGTTGATCCTCTAAATATCCTGAGACCTCACAGCAAGTTGGTTCATCAGCTGCCACTGGTTAGTGCGTACTCATCCTTTGGAAGAACAGTAGGTCTTGGATCTGAGCAGCACAAAAGGAGACTGGATAGTGCAACAAATGAACCCTTATTCACAAATGTCACCAGGGATTTTATTGGCGCTCTAGATTACATATTTTACACGGCGGATTCATTGATCATATAG 1674 0.4301 MLSVLRVHLPSDIPIVGCELTPYVLIRRPDKIVTTDDVPETAPLDGHFLRYRWYRVQSDKKVAVCSIHPSEQATLQCVGCIKAKIPVAKSYHCTPKCFSDAWQHHRLLHDRAASAVNENGADEEEIFGRYNSSGSGVINTSLSGSASSASLANVSTPLYPAAVTQRSGGETWIEVGRSKTYTPTADDIGHVLKFECVVVDAETKVPVGHVNTILTSRVIPAPSPIPRRLIPVDGMAHIDADARITSSGTFTVLSYNILSDAYASNDLYGYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFAPELDKHGYYGLYKRKTNEVFSGSTNTVDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKNALNRLVKDNVALIVVLEAKVNNHVVDSPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLALGKVDQTHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFGRTVGLGSEQHKRRLDSATNEPLFTNVTRDFIGALDYIFYTADSLII 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1314 557 CDD Deadenylase_CCR4 252 555 - -
Dere02g1314 557 Pfam Endonuclease/Exonuclease/phosphatase family 253 552 IPR005135 GO:0003824
Dere02g1314 557 FunFam Carbon catabolite repressor protein 4 1 219 557 - -
Dere02g1314 557 SUPERFAMILY DNase I-like 248 555 IPR036691 -
Dere02g1314 557 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 158 554 - -
Dere02g1314 557 Gene3D Endonuclease/exonuclease/phosphatase 222 557 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1314 Dere-ChrDere02 12609288 12614144 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2548 01 40325315 40332391 Dere02g1314 02 12609288 12614144 CCT
Dere02g1314 02 12609288 12614144 Dere02g1314 02 12609288 12614144 ECH