Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2548 ATGCTGAGCGTGCTACGCGTGCACCTCCCCTCTGATATACCCATTGTAGGCTGTGAGCTCACGCCATACGTGCTCCTACGGCGACCCGACAAGACTGTTACCACCGACGATGTGCCCGAGTCAGCCCCATTAGACGGCCATTTCTTACGGTACAAGTGGTATCGCGTACAAAGTGATAGAAAGGTTGCTGTCTGCAGCGTACATCCATCTGAGCAGGCGACACTGCAGTGCATTGGTTGTGTTAAGGCCAAAATACCTGTTTCCAAAAGTTACCACTGCACGCCGAAGTGCTTTTCAGATGCATGGCAGCATCATCGTGTTTTACATGACCGTGCTGCAAGTGCAGTTAATGAAAATGGAAATGAGGAAGAGGAGGTCTTTGGTCGCTTTAATAGTTCTGGATCTGGGATAATCAATAATAGCTTATCTGGCTCTGCATCAAGTGCTTCATTGACAAATGGGTCAGCACCTTTGTATCCAGCTGCTGTTACGCAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAAACATATACCCCAACAGTTGATGACATTGGTCATGTCTTAAAGTTTGAGTGTGTGGTGGTTGATGCAGAGACAAAAGTTCCTGTGGGACATGTCAACACTATACTAACTTCTCGTGTCATTCCTGCTCCATCACCTAGTCCACGTCACCTGATACCTGTTGATGGGATGGGTCCTTTAGATGCAGATGGACGTATAACATCTTCAGGAACTTTTACTGTTTTATCATACAACATTTTGTCTGATGCATATGCCTCAAATGATTTATACGGTTACTGCCCATCGTGGGCTCTTTCATGGCCATATCGCCGACAAAATTTGTTAAGAGAAATAGTTGGTTATCGTGCAGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTACGAGGAATTTTTTGCCCCTGAACTGGACAAACATGGGTATTATGGTTTATATAAGAGAAAAACAAATGAGGTATACAATGGTAATAGCAATACAATTGATGGTTGTGCAACATTTTTCCGCAGAGACAAATTTTCACATGTGAAGAAATATGAGGTGGAATTTAATAAGGCTGCACAGTCTTTGACAGATGCTATGATTCCAACCACTCAGAAGAAAACTGCTTTAAATAGGCTTGTAAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCAATTGATAATCCTGGGAAAAGGCAGCTTCTTTGTGTGGCTAATACACATGTTAACGTTCACCAAGATTTGAAGGATGTCAAACTCTGGCAGGTGCATACGCTCTTGAAAGGGTTGGAGAAAATAGCTGCAAGTGCAGACATTCCAATGCTGGTTTGTGGAGATTTTAATTCAGTTCCTGGAAGTGCCCCTCATGCACTTCTTGCAATGGGGAAGGTAGACCCATTACATCCAGATTTAGCAGTTGACCCACTTAATATCTTGCGCCCTTACAGCAAGTTGGTTCATCAGTTGCCACTGGTTAGCGCATACTCTTCTTTTGCAAGAACGGTAGGTCTTGGTTTTGAGCAGCATAAAAGGAGACTGGACAGTGTAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTATATCTTTTATACAGCGGATTCTTTGGCGTTGACATTTAAAGGTCATTTCCAGAGACACGTAAAGAAAAAGGCCGAAAGAAGCATTTGGTTGATAAGTTATTGTAAGAATGGTAGATCATCCCTTTGTCTTTCCCAGGTATTTCCGTGTGGAATCCTTTCAATGATCTGCTTTGTATTATGCCACCCGTCTCATAGAAAAAAAAATTATGATTATGCCTTATTGAGTTGTCTGCTCTCCTATCCCCAATCATTTTCTGAAGCAGAAAATTTCTTAATAATGCCCGCTGGCTCACTTCGTCCTAGCAATTATAACAAAGGATCCAACGAATACAAAATTATGAAACCATCTAGCACTGAGATGTATGCGTTTTCGAGTTTAACCAATCTGAAATGGTTGATAATCGGGCTCCGCCCGATTGATTATGCCATGTTTAAGTGTTCTGTTTTTTCTTTTGGTTCCATTCAGTCTGGTTTGGTACAGCCTAGTCCGGTTTGA 2136 0.4181 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRVQSDRKVAVCSVHPSEQATLQCIGCVKAKIPVSKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNSSGSGIINNSLSGSASSASLTNGSAPLYPAAVTQRSGGETWFEVGRSKTYTPTVDDIGHVLKFECVVVDAETKVPVGHVNTILTSRVIPAPSPSPRHLIPVDGMGPLDADGRITSSGTFTVLSYNILSDAYASNDLYGYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFAPELDKHGYYGLYKRKTNEVYNGNSNTIDGCATFFRRDKFSHVKKYEVEFNKAAQSLTDAMIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPIDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPLHPDLAVDPLNILRPYSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDSVTNEPLFTNVTRDFIGTLDYIFYTADSLALTFKGHFQRHVKKKAERSIWLISYCKNGRSSLCLSQVFPCGILSMICFVLCHPSHRKKNYDYALLSCLLSYPQSFSEAENFLIMPAGSLRPSNYNKGSNEYKIMKPSSTEMYAFSSLTNLKWLIIGLRPIDYAMFKCSVFSFGSIQSGLVQPSPV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2548 711 SUPERFAMILY DNase I-like 248 555 IPR036691 -
Dere01g2548 711 CDD Deadenylase_CCR4 252 558 - -
Dere01g2548 711 Gene3D Endonuclease/exonuclease/phosphatase 220 572 IPR036691 -
Dere01g2548 711 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 162 555 - -
Dere01g2548 711 Pfam Endonuclease/Exonuclease/phosphatase family 253 557 IPR005135 GO:0003824
Dere01g2548 711 FunFam Carbon catabolite repressor protein 4 1 219 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2548 Dere-ChrDere01 40325315 40332391 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2548 01 40325315 40332391 Dere02g1314 02 12609288 12614144 CCT
Dere01g2548 01 40325315 40332391 Dere01g2548 01 40325315 40332391 ECH