Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1090 ATGCGGGGTTTTCTTCCATTGGTATTGACCTTAGCCACCGTGTTGGTGCCCCTATCGGTAGTATACAGCGGATTGCCGGGGGGTTTTCTCCCCCTTGAACGAGCTATTCCTCTAAGCCAGCGAGTGGAACTGGAAGCGCTCAGAGCACGTGACAGAGCCAGGCATGCTCGAATCTTAAAAGGAGGTGTGGTAGGGGGTGTTGTCGACTTCTCAGTCGAAGGGACTTCCGATCCTTACTCCGTTGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCGAGAGAATTTAAAGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTGCTTGCAATGCTTGCAGTGATTGCCCTCAATCTAGTGACCTGGGGATTGAGCTCAATTTCTTTGATACAGCCAGCTCCTCTACGGCCTCGCTAGTTTCCTGCTCAGACCCAATATGTACTTCTGCGGTTCAAAGTGCTGCCACAGATTGCTTCTCTCAGATTAGTCAGTGTAGCTACACCTTCCAGTATGCAGATGGAAGTGGGACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACATGATACTGGGACAATCTATGCTTGCTAATTCTTCAGCGACTGTTGTTTTCGGGTGCAGCACCTACCAGTCTGGAGAATTGACTAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTTTCTGTCATTTCTCAGTTGTCATCGCGGCGCATAACACCAAAAGTCTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTCCTCCCAATTGATTCAGCTGTGTTTGCAACATCTAACAATCAAGGAACGATAGTTGACAGTGGTACAACATTGGCATACCTTGTTGAAGAAGCATATGATCCTTTGGTCAATGCTATAACTACTGCTGTGTCACAATCTGCCAGTCCCATTATTTCAAAAGGATACCAGTGTTATTTGGTCTCAAGCAGCATAGGTGGCATATTTCCTCCAGTCAGTTTAAATTTTGCAGGCGGGGCATCCATGGTTTTAAAACCAGAACAGTACCTTATGCATTATGGTTTCCTTGATGGCTCTGCAATGTGGTGTATTGGTTTCCAGAAAGTGCAAGAGGGAATTACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTCTATGACTTGGCTCACCAACGAATTGGGTGGACTAACTATGATTGTTCCTTGGCCGTAAATGTCTCCCTGACCATGAGCAAGGATGAGTACATCAATGCAGGAAGGCGGAGTGAAAGTAGCTCACTGATGGACGTTCTCACCAATTTGCTACCCGTTAACATCGCCACTCTCTTTTTGTACATACTAGTTTTCATGGAGTGCCCATCGTGA 1491 0.4527 MRGFLPLVLTLATVLVPLSVVYSGLPGGFLPLERAIPLSQRVELEALRARDRARHARILKGGVVGGVVDFSVEGTSDPYSVGLYFTKVKLGSPPREFKVQIDTGSDILWVACNACSDCPQSSDLGIELNFFDTASSSTASLVSCSDPICTSAVQSAATDCFSQISQCSYTFQYADGSGTSGYYVSDLMHFDMILGQSMLANSSATVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRRITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSAVFATSNNQGTIVDSGTTLAYLVEEAYDPLVNAITTAVSQSASPIISKGYQCYLVSSSIGGIFPPVSLNFAGGASMVLKPEQYLMHYGFLDGSAMWCIGFQKVQEGITILGDLVLKDKIFVYDLAHQRIGWTNYDCSLAVNVSLTMSKDEYINAGRRSESSSLMDVLTNLLPVNIATLFLYILVFMECPS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1090 496 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Dere02g1090 496 PRINTS Pepsin (A1) aspartic protease family signature 414 429 IPR001461 GO:0004190|GO:0006508
Dere02g1090 496 PRINTS Pepsin (A1) aspartic protease family signature 317 328 IPR001461 GO:0004190|GO:0006508
Dere02g1090 496 ProSiteProfiles Peptidase family A1 domain profile. 84 438 IPR033121 -
Dere02g1090 496 Pfam Xylanase inhibitor C-terminal 287 438 IPR032799 -
Dere02g1090 496 Gene3D Acid Proteases 271 448 IPR021109 -
Dere02g1090 496 SUPERFAMILY Acid proteases 79 444 IPR021109 -
Dere02g1090 496 FunFam Aspartic proteinase-like protein 2 271 449 - -
Dere02g1090 496 Gene3D Acid Proteases 69 270 IPR021109 -
Dere02g1090 496 FunFam Aspartic proteinase-like protein 2 67 270 - -
Dere02g1090 496 CDD pepsin_A_like_plant 84 442 IPR034161 -
Dere02g1090 496 Pfam Xylanase inhibitor N-terminal 84 269 IPR032861 -
Dere02g1090 496 PANTHER ASPARTYL PROTEASES 30 436 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1090 Dere-ChrDere02 10421247 10425862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1090 79 443 Miscellaneous Gene Families AT1G44130 28.424 1.64e-43 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2776 01 42631363 42635998 Dere02g1090 02 10421247 10425862 CCT
Dere02g1090 02 10421247 10425862 Dere02g1090 02 10421247 10425862 ECH