Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2776 ATGCGGTGTTTAGTTCCGATGTTATTGGCCTTAGCCACCGTTTTTGTGCTGGTATCGGTAGTTCACGGTGTAATGCCGAAGGGTTTCCTCCCTCTTGAACGGGCAATTCCTATTAGTCAGCGAGTGGAACTGGAAGCACTCAGAGCTCGCGACCGAGCTAGGCATGCTCGAATCTTGCAAGGTGTGGTAGGTGGTGTTGTCGACTTCTCAGTCAAAGGGACCTCCGATCCTTCCACTATTGGGCTGTATTATACAAAAGTGAAGCTAGGCTCTCCTCCAAGAGAATTCAACGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTAACTGCAATACTTGTGGTGATTGCCCTCAATCTAGTCAACTGCAGGTTGAGCTCAATTTCTTTGATACAGCGAGCTCGTCCACTGCTGCTCTGATTACCTGCTCAGACCCAATATGCACTTCTTCTACTCTTAGTGCGGCAACTGAATGCACCCCTCAGATTAATCAATGCAGCTACACATTTCAGTACGGAGATGGAAGTGGGACATCGGGTTATTATGTTTCTGATGCAATGTATTTTGACATGATCCTCGGACAGTCTATGCTGGCTAACTCTTCGGCTAAAATTGTTTTTGGGTGTAGCACTTATCAGTCTGGAGATTTGACTAAGACAGATAAAGCAGTGGATGGAATTTTTGGTTTTGGCCCTGGTGCTCTGTCCGTGATTTCACAATTATCATCACGAGGCATGACCCCCAAAGTGTTTTCTCACTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGAGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCGTCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCTATTAATTCAGCTGTATTTGCAACATCTAACAACCGAGGAACTATAGTTGACACTGGTACAACCTTGGCATACCTTGTTCAAGAAGCATATGATCCATTGGTGAATGCTATAACTACCACTGTGTCGCAGTCTGCCACTGCCATTATTTCAAAAGGAAGACAGTGTTATTTGGTCTCAACCAGTGTAGGTGATGTATTTCCTCCAGTCAGTTTGAACTTTGCTGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTACCTTCTACACAGTGACTTCATTGATGGTGTTCCAATGTGGTGTATTGGTATCGAGAAAGTGCAGGAGGGAGTCTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATTTTTGTCTACGACTTAGCTCATCAAAGAATTGGATGGGCTAACTATGATTGCTCCTTGTCTGTAAATGTCTCTGTGACCACCAGCAAGGATGAGTACGTCAATGCAGGACAGCTAAGTGTGAGCGGCTCAGAATTAGACATTATAGCAAAGTTGCTACCTTTAAGCATTGCAGTTCTCTTTATGCACATAATAGTTTTCTGGGAATCCCAATTTTTGTAA 1491 0.4366 MRCLVPMLLALATVFVLVSVVHGVMPKGFLPLERAIPISQRVELEALRARDRARHARILQGVVGGVVDFSVKGTSDPSTIGLYYTKVKLGSPPREFNVQIDTGSDILWVNCNTCGDCPQSSQLQVELNFFDTASSSTAALITCSDPICTSSTLSAATECTPQINQCSYTFQYGDGSGTSGYYVSDAMYFDMILGQSMLANSSAKIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGMTPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINSAVFATSNNRGTIVDTGTTLAYLVQEAYDPLVNAITTTVSQSATAIISKGRQCYLVSTSVGDVFPPVSLNFAGGASMVLKPEQYLLHSDFIDGVPMWCIGIEKVQEGVSILGDLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYVNAGQLSVSGSELDIIAKLLPLSIAVLFMHIIVFWESQFL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2776 496 SUPERFAMILY Acid proteases 81 444 IPR021109 -
Dere01g2776 496 Gene3D Acid Proteases 67 269 IPR021109 -
Dere01g2776 496 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Dere01g2776 496 CDD pepsin_A_like_plant 83 441 IPR034161 -
Dere01g2776 496 FunFam Aspartic proteinase-like protein 2 66 269 - -
Dere01g2776 496 PANTHER ASPARTYL PROTEASES 11 435 IPR001461 GO:0004190|GO:0006508
Dere01g2776 496 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Dere01g2776 496 FunFam Aspartic proteinase-like protein 2 270 448 - -
Dere01g2776 496 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Dere01g2776 496 Gene3D Acid Proteases 270 448 IPR021109 -
Dere01g2776 496 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Dere01g2776 496 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Dere01g2776 496 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2776 Dere-ChrDere01 42631363 42635998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2776 67 442 Miscellaneous Gene Families AT1G44130 28.133 6.41e-43 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2776 01 42631363 42635998 Dere02g1090 02 10421247 10425862 CCT
Dere01g2776 01 42631363 42635998 Dere01g2776 01 42631363 42635998 ECH