Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1055 ATGGGTGAAGTAACGAAACGACGAAAGGGTAAGAGTTTTTCTGGATCTGCTGTGTTGACAAATGATTATGCTGCACTAGATTCACTGAGTGGCACCTTTCTTCGAGCAGTCTCTCCCTCGCGTTCTCACTCACTCTGCATTTATACACACCAGAATCATTCTGCTTTCTGCTTACACTATAGCTTATTCACCATTTCTTCTATCTTCATGGCTCTCTTTCTCCTCGCCATATTAATCTTGATGGTCCCTTCAAGCAATGCCTCGTGGCCACCTTCACCTGGCTACTGGCCAAGTTCTAAATTCAGGTCTATGAGCTTCTACAAAGGATTTAGAAACCTCTGGGGTCCTCAGCACCAAAGACTAGAGCAAAATGCATTAACAATTTGGCTCGATAGAACTTCAGGAAGTGGGTTCAAGTCAGTTCGTCCCTTTCGATCCGGGTACTTCGGTGCTTCCATTAAGCTTCAACCTGGGTATACTGCAGGAGTGATCACAGCCTTCTACCTTTCAAACAACGAAGCACATCCAGGCCTCCATGATGAAGTGGACATCGAGTTTCTCGGGACAACTTTTGGAAAGCCATATACTTTGCAGACCAATGTCTACATAAGAGGAAGTGGTGACGGCAAAATCATAGGCAGAGAAATGAAGTTCCATCTCTGGTTTGATCCAACCGAAGATTTTCATCACTATGCTATACTCTGGAGTCCTAAGGAAATTATATTCCTCGTGGATGATGTGCCCATAAGGAGGTACCCAAGGAAGAGTGACGCAACGTATCCTGTGAGGCCAATGTGGGTGTATGGTTCGATATGGGATGCGTCATCGTGGGCAACTGAAGATGGGAAATACAAAGCTGATTACAGGTACCAACCCTTTGTTGCTAAGTACACCAACTTCAAAGCTAGTGGCTGCTCAGCCTATGCACCTACTTGGTGCCACCCAGTCTCAGTTTCGCCATCTCGGTCCGGTGGGTTGACCAGACAGCAATACAGGACCATGATATGGGTTCAGAGACACCATATGGTTTATAACTATTGCAACGATCCCAAGAGAGACCACAGGCTAACACCAGAGTGTTGGGGTTAA 1089 0.4601 MGEVTKRRKGKSFSGSAVLTNDYAALDSLSGTFLRAVSPSRSHSLCIYTHQNHSAFCLHYSLFTISSIFMALFLLAILILMVPSSNASWPPSPGYWPSSKFRSMSFYKGFRNLWGPQHQRLEQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGLHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTEDFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATYPVRPMWVYGSIWDASSWATEDGKYKADYRYQPFVAKYTNFKASGCSAYAPTWCHPVSVSPSRSGGLTRQQYRTMIWVQRHHMVYNYCNDPKRDHRLTPECWG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1055 362 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 85 297 IPR000757 GO:0004553|GO:0005975
Dere02g1055 362 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 324 360 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Dere02g1055 362 SUPERFAMILY Concanavalin A-like lectins/glucanases 128 347 IPR013320 -
Dere02g1055 362 Gene3D - 86 360 - -
Dere02g1055 362 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 103 360 IPR044791 GO:0004553
Dere02g1055 362 FunFam Xyloglucan endotransglucosylase/hydrolase 93 361 - -
Dere02g1055 362 Pfam Glycosyl hydrolases family 16 108 289 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1055 Dere-ChrDere02 9999287 10002421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g1055 70 360 Glycoside Hydrolase AT3G44990 66.323 3.72e-146 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2826 01 43104896 43108616 Dere02g1055 02 9999287 10002421 CCT
Dere02g1055 02 9999287 10002421 Dere02g1055 02 9999287 10002421 ECH