Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2826 ATGCAAGCAATTCAAGGCACTTGTGAGCATTTTGATTTGTCGGCCAAGTTGGCCCCACTCGATACCATCCCTCTCCCAGTCTTCTTCTGTGACTGTGTGATGAGTAAATTAGCTGAGGTAGGAGATGAACAGGAAAGAGGCTCAGACCCAAGTGCCTTCAATGAGGGTGGAAGGCTCACAGACACCTGCCTTGAGCAGCCTCTCTCCTTTTTACTCTCACACCCTGCATTTATACAGAGCAGATTTAGTCTGCTTTCTGTTTACACTGTAGCTCACTCACCCTTTCTTGCTTCCATCTTTATGGCTCTCCTTCTTTTTGTTATTTTAATCTTTCTGATCCCTTCAAGCAATGCCTACGGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAATTCAGGTCTATGAGCTTTTATAAAGGATTTAGAAACCTCTGGGGTCCTCAGCATCAATCACTACACCAAAATGCATTAACAATATGGCTTGATAAAACCTCAGGAAGTGGCTTCAAGTCTGTTCGCCCATTTCGATCCGGTTACTTTGGTGCTTCCATGATGCTCCAACCTGGCTACACCGCCGGCGTTATAACATCTCTCTATCTTTCAAACAATGAAGCACATCCGGGCTTCCATGATGAAGTGGACATTGAGTTTCTGGGGACAACATTTGGAAGGCCTTATACCTTGCAGACCAATGTTTATGTAAGAGGAAGTGGGGATGGTAAAATTATAGGCAGAGAGATGAAATTCCATCTCTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATACTGTGGAGTCCTAAGGAAATAATATTCTTTGTAGATGATGTGCCCATAAGGAGGTACCCGAGAAAGAGTGCTGCAACTTTTCCTGTGAGACCAATGTGGCTTTATGGTTCAATATGGGATGCTTCATCATGGGCAACCGAAGATGGGAAGTACAAAGCTGATTACAGATATCAGCCTTTCGTTGCAAGGTATACCAACTTCAAGGCTAGTGGTTGCTCAGGCTATGCCCCTGCTAGGTGCCACCCAGTCTCAGCCTCGCCGTATCGCTCCGGTGGGCTTACCAGACAGCAATATAAGGCCATGAGGTGGGTACAAAGATACCACATGGTTTACAATTATTGTAGGGATCCAAAAAGAGACCACAGACTAACACCGGAGTGCTGGCTTCCAAGGTGA 1188 0.4562 MQAIQGTCEHFDLSAKLAPLDTIPLPVFFCDCVMSKLAEVGDEQERGSDPSAFNEGGRLTDTCLEQPLSFLLSHPAFIQSRFSLLSVYTVAHSPFLASIFMALLLFVILIFLIPSSNAYGPPSPGYWPSSKFRSMSFYKGFRNLWGPQHQSLHQNALTIWLDKTSGSGFKSVRPFRSGYFGASMMLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGRPYTLQTNVYVRGSGDGKIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFFVDDVPIRRYPRKSAATFPVRPMWLYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCSGYAPARCHPVSASPYRSGGLTRQQYKAMRWVQRYHMVYNYCRDPKRDHRLTPECWLPR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2826 395 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 134 391 IPR044791 GO:0004553
Dere01g2826 395 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 354 391 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Dere01g2826 395 Pfam Glycosyl hydrolases family 16 139 320 IPR000757 GO:0004553|GO:0005975
Dere01g2826 395 FunFam Xyloglucan endotransglucosylase/hydrolase 124 393 - -
Dere01g2826 395 SUPERFAMILY Concanavalin A-like lectins/glucanases 137 394 IPR013320 -
Dere01g2826 395 Gene3D - 117 391 - -
Dere01g2826 395 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 328 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2826 Dere-ChrDere01 43104896 43108616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2826 101 391 Glycoside Hydrolase AT3G44990 66.894 5.66e-143 406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2826 01 43104896 43108616 Dere02g1055 02 9999287 10002421 CCT
Dere01g2826 01 43104896 43108616 Dere01g2826 01 43104896 43108616 ECH