Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0647 ATGGGTAAGGTTCTCCGAGAAACGTCAAAGCCATCCTCAAACTCTTCTTCCCCATTTCCATCTTCACCTGCAACAACCTCGTCGTCATCGATCACCGACACTATTAGGGGCTCTCACCAGTTCAGGATCACGGGCTATTCCTTATCAAAAGGAATCGGGATTGGAAAATATATAGCATCTGATACGTTTTCAGTCGGTGGATATGAGTGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTCGAGGACAATGCTACTTATGTATCACTATTTATCGCGCTTGCCAGTGAGGGGACGGACGTTAGGGCACTTTTTGAGCTAACCCTTTTGGATCAGAGCGGGAAGGAGAGACACAAGGTTAATAGTCATTTTGAGAGGACGCTGGAAAGCGGGCCGTACACGTTAAAGTACCGCGGTAGCATGTGGGGCTACAAGCGATTCTTCAAGAGAACAGTTCTGGAGACATCAGACTACCTTAAAGATGATTGCCTTTGTGTTACTTGTAGCGTTGGTGTTGTGAGATCATACATAGAGGGCCCTAAAATCTACTCCATCGCAATACCGCCATCTAACATAGGTCAGCAGTTTGGGCGGCTACTTGAAAGTGAAAAAGGAACTGACGTGAGTTTTGAAGTTGATGGAGAAATTTTTGCTGCTCATAAATTAATACTGGCAGCTCGTTCACCTGTTTTCAGAGCCCAACTATTTGGTCCTATGAAAGATCAGAATACTCACTGTATTAAAGTTGAAGACATGGAGGCTCCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCACTGCCTGACATGCAAGAGCTTACTGGGTTGAACTCAAAATGGGCAACTACCTTAATGGCTCAGCATCTGCTGGCAGCAGCAGATCGGTATGGCTTAGAGAGGCTTAGGTTGATGTGTGAAGCCAATCTCTGTGAAGATGTTGCAATAAACACTGTGGCTACAACTTTAGCCTTGGCAGAGCAGCATCATTGTTTCCAGCTCAAAGCAGTCTGTCTCAAATTTATTGCAACACCTGAAAATCTCAGAGCTGTGATGCAGACTGATGGTTTTGATTACCTGAAGGAAAGTTGTCCGTCTGTTCTGACTGAGCTATTGGAGTATGTGGCTAGATTTACTGAGCATTCAGACTTCATGTGCAAGCATAGGAATGAAGGAATACTCGATGGCAGCGACATAAATGGTAGGCGGGTCAAGCAAAGGCTATAG 1230 0.4504 MGKVLRETSKPSSNSSSPFPSSPATTSSSSITDTIRGSHQFRITGYSLSKGIGIGKYIASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTVLETSDYLKDDCLCVTCSVGVVRSYIEGPKIYSIAIPPSNIGQQFGRLLESEKGTDVSFEVDGEIFAAHKLILAARSPVFRAQLFGPMKDQNTHCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLERLRLMCEANLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATPENLRAVMQTDGFDYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEGILDGSDINGRRVKQRL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0647 409 MobiDBLite consensus disorder prediction 7 32 - -
Dere02g0647 409 SMART BTB_4 206 315 IPR000210 GO:0005515
Dere02g0647 409 CDD MATH 37 170 IPR002083 GO:0005515
Dere02g0647 409 MobiDBLite consensus disorder prediction 1 32 - -
Dere02g0647 409 ProSiteProfiles BTB domain profile. 206 265 IPR000210 GO:0005515
Dere02g0647 409 SUPERFAMILY POZ domain 183 313 IPR011333 -
Dere02g0647 409 Gene3D Potassium Channel Kv1.1; Chain A 182 309 IPR011333 -
Dere02g0647 409 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Dere02g0647 409 CDD BTB_POZ_BPM_plant 192 312 - -
Dere02g0647 409 CDD BACK_AtBPM-like 312 375 IPR034090 -
Dere02g0647 409 Gene3D - 315 391 - -
Dere02g0647 409 SMART math_3 41 153 IPR002083 GO:0005515
Dere02g0647 409 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 174 IPR008974 GO:0005515
Dere02g0647 409 Pfam BTB/POZ domain 197 313 IPR000210 GO:0005515
Dere02g0647 409 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 26 373 IPR045005 GO:0016567
Dere02g0647 409 SUPERFAMILY TRAF domain-like 34 172 - -
Dere02g0647 409 FunFam BTB-POZ and math domain 1 315 392 - -
Dere02g0647 409 FunFam BTB-POZ and math domain 1 182 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0647 Dere-ChrDere02 6068646 6074705 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3313 01 47891664 47895631 Dere02g0647 02 6068646 6074705 CCT
Dere02g0647 02 6068646 6074705 Dere02g0647 02 6068646 6074705 ECH