Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3313 ATGGGTAAGATTCTCCGAGAAACCTCAAGGCCATCCTCCAATTCTTCATCCCCATCACCTTCTTCGCCACCTGCAACGACCTCGTCGACATCGATTACCGAGACTGTAAGGGGTTCTCATCAGTTCAAGATCGCGGGTTATTCCTTGTCAAAAGGAATTGGGATTGGGAAATACATAGCATCTGACACGTTTTCGGTAGGTGGATATGAGTGGGCGATCTACTTTTATCCGGATGGGAAGAGCGTCGAAGACAATGCTACCTACGTTTCGCTGTTTATCGCGCTTGCTAGTGAGGGCACAGATGTTAGGGCTCTTTTTGAGTTGACCCTTTTAGATCAGAGCGGGAAAGAGAGGCACAAGGTACATAGTCATTTTGAGAGGACGCTCGAAAGTGGGCCGTACACCTTAAAATACCGCGGTAGCATGTGGGGTTACAAAAGGTTTTTTAAGAGAACAGCCCTTGAGACATCAGACTACCTTAAGGATGATCGCCTCTGTGTTAACTGTAGCGTTGGTGTTGTGAGGTCACACACCGAGGGCCCCAAGATCTACTCCATATCAATACCATCTTCTAACATCGGTCAACAATTTGGGCAGCTGCTGGAAAGTGGAAAAGGAAGTGATGTGAGTTTTGAAGTTAATGGAGAAGTTTTTGTAGCTCATAAATTGGTACTAGCTGCTCGTTCACCTGTTTTCAGAGCCCAACTTTTTGGTCCTATGAAAGATCAGAATACCCACTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTTAAGGCATTACTTCATTTTATATACTGGGACTCGCTGCCTGATCTACAAGAGCTAACTGGTTTGAACTCAAAATGGGCAACTACTTTGATGTCCCAGCACCTGCTGGCAGCTGCAGATCGGTATGGTTTAGAGAGGCTTAGGCTGATGTGTGAAGCCAGTCTTTGTGAAGATGTTGCGATAAACACTGTGGCTACAACTCTTGCTTTAGCAGAGCAGCACCATTGTTTCCTGCTGAAAGCAGTCTGTCTAAAATTCATTGCAATGCCTGAAAATCTCAGAGCTGTGATGCAAACCGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTGGCCAGATTCACTGAGCATTCAGACTTTATGTGCAAGCATAGGAGTGAAGCGATTCTTGATGGCAGCGACATAAATGGTAGGCGGGTGAAACAAAGACTATAG 1233 0.4542 MGKILRETSRPSSNSSSPSPSSPPATTSSTSITETVRGSHQFKIAGYSLSKGIGIGKYIASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDRLCVNCSVGVVRSHTEGPKIYSISIPSSNIGQQFGQLLESGKGSDVSFEVNGEVFVAHKLVLAARSPVFRAQLFGPMKDQNTHCIKVEDMEAPVFKALLHFIYWDSLPDLQELTGLNSKWATTLMSQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFLLKAVCLKFIAMPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRSEAILDGSDINGRRVKQRL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3313 410 SMART math_3 42 154 IPR002083 GO:0005515
Dere01g3313 410 SUPERFAMILY POZ domain 184 314 IPR011333 -
Dere01g3313 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 374 IPR045005 GO:0016567
Dere01g3313 410 MobiDBLite consensus disorder prediction 1 34 - -
Dere01g3313 410 MobiDBLite consensus disorder prediction 7 34 - -
Dere01g3313 410 CDD MATH 38 171 IPR002083 GO:0005515
Dere01g3313 410 CDD BTB_POZ_BPM_plant 193 313 - -
Dere01g3313 410 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Dere01g3313 410 CDD BACK_AtBPM-like 313 376 IPR034090 -
Dere01g3313 410 SMART BTB_4 207 316 IPR000210 GO:0005515
Dere01g3313 410 FunFam BTB-POZ and math domain 1 183 310 - -
Dere01g3313 410 SUPERFAMILY TRAF domain-like 34 173 - -
Dere01g3313 410 Gene3D - 316 393 - -
Dere01g3313 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Dere01g3313 410 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Dere01g3313 410 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Dere01g3313 410 Pfam MATH domain 56 171 IPR002083 GO:0005515
Dere01g3313 410 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3313 Dere-ChrDere01 47891664 47895631 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3313 01 47891664 47895631 Dere02g0647 02 6068646 6074705 CCT
Dere01g3313 01 47891664 47895631 Dere01g3313 01 47891664 47895631 ECH