Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0527 ATGACTTTCTTCCTCTTCCTCTCCTTCTCTACTCTCCTCTTCCTCCTTTCTTTCTTTTCTTCTTCTCATGCCTTGCCTCCCCACCCCCACCACCCTCGTTTTGCATCTCACAATTACAGAGATGCCCTATCCAAATCCATTCTCTTCTTCGAAGGTCAGAGGTCAGGCAAGCTCCCTCCGAACCAGAGGATGACATGGAGGAGGGACTCTGCTCTCTCAGATGGCTCTGCCATGAATGTTGACTTGGTTGGAGGGTACTATGATGCAGGGGACAACGTCAAGTTTGGTTTTCCCATGGCATTTACCACCACCATGCTTTCCTGGAGCGTCATTGAGTTTGGTGGGTTGATGAAAGATGAACTGCAGAATGCAAGAGAAGCGATTCGCTGGGCTACCGATTACCTCCTTAAAGCTACTGCATATCCAGATACCATTTATGTTCAGGTGGGAGATGCTAGGAGTGACCACGCTTGCTGGGAGAGACCTGAAGACATGGATACCCCAAGAAGTGTGTACAAGATCGATAAAAACAACCCTGGTTCAGAAGTTGCCGCTGAAACTGCTGCCGCTCTTGCAGCCGCTTCTCTGGTTTTCCAAAAAAGTGATCCCGCTTACTCCAATACTCTAGTCACCAGGGCTACAAGGGTGTTCCAGTTTGCTGACAAATACAGGGGATCCTACAGCGATGGCTTGAAGCCCATTGTATGCCCTTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTATGGGGTGCTGCTTGGCTGCACAAGGCTACCAAGAACCCAATGTACCTTAACTACATTCAAGTTAATGGTCAGACACTTGGGGCTGCGGAGTTTGACAATACCTTTGGGTGGGATAACAAGCATGTTGGAGCAAGGATACTCCTTTCTAAGGAATTTCTTGTTCAAAGAGTACAATCCCTGCATGACTACAAGGGTCACGCAGACAATTTCATCTGTTCTGTAATTCCTGGGGCCTCTTTCTCTTCCTCGCAATATACCCCAGGTGGGCTTCTGTTCAAGATGAGTGATAGTAACATGCAGTATGTGACGTCCACTTCCTTTCTGCTCTTAACCTACGCCAAATACTTGACCTCAGCTCATGTGTCTGTCAACTGTGGGGGAACCACAGTTACCCCAAAGACTCTTCGGACAATAGCCAAGAAACAGGTTGATTACTTGCTGGGAGATAATCCCCTGAAGATGTCGTACATGGTGGGGTATGGTCCAAATTACCCACGAAGGATACACCACAGGGGCTCATCTATACCGTCCATTGCGGTACACCCTGCCAAGATCCAATGCTCGGCAGGGTTCAGCGTCATGAATTCACTAGCCCCAAATCCAAACATACTAATGGGTGCTGTGGTTGGTGGGCCAGACCTGCATGATAGGTTCCCTGATGAACGGTCAGATTACGGGCAATCAGAACCAGCCACTTACATTAACGCACCCCTTGTAGGAGCACTGGCTTATCTTGCTCAGTCTTCTGGCCAACTCTAG 1509 0.4851 MTFFLFLSFSTLLFLLSFFSSSHALPPHPHHPRFASHNYRDALSKSILFFEGQRSGKLPPNQRMTWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKDELQNAREAIRWATDYLLKATAYPDTIYVQVGDARSDHACWERPEDMDTPRSVYKIDKNNPGSEVAAETAAALAAASLVFQKSDPAYSNTLVTRATRVFQFADKYRGSYSDGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQTLGAAEFDNTFGWDNKHVGARILLSKEFLVQRVQSLHDYKGHADNFICSVIPGASFSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHVSVNCGGTTVTPKTLRTIAKKQVDYLLGDNPLKMSYMVGYGPNYPRRIHHRGSSIPSIAVHPAKIQCSAGFSVMNSLAPNPNILMGAVVGGPDLHDRFPDERSDYGQSEPATYINAPLVGALAYLAQSSGQL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0527 502 Gene3D - 35 499 IPR012341 GO:0005975
Dere02g0527 502 Pfam Glycosyl hydrolase family 9 39 492 IPR001701 GO:0004553|GO:0005975
Dere02g0527 502 SUPERFAMILY Six-hairpin glycosidases 36 499 IPR008928 GO:0005975
Dere02g0527 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
Dere02g0527 502 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Dere02g0527 502 FunFam Endoglucanase 35 500 - -
Dere02g0527 502 PANTHER ENDO-1,4-BETA-GLUCANASE 15 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0527 Dere-ChrDere02 5082384 5084556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0527 5 498 Glycoside Hydrolase AT1G02800 77.246 0.0 775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3434 01 48872586 48874859 Dere02g0527 02 5082384 5084556 CCT
Dere02g0527 02 5082384 5084556 Dere02g0527 02 5082384 5084556 ECH