Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3434 ATGTCTCTCTTCCTTTCCTTTTCTTCTCTGCTCTTCCTCCTCTTTCTCTTCTCCGCCACTTTGCTCTATGGCCATGCCTTCCCTGCCCATTTCAATCACCCCATACGCCATCGTCACCACCCTCGCTTTGCCACTCACAACTACAGAGATGCTCTCTCCAAGTCCATCCTCTTTTTTGAAGGTCAGAGATCAGGGAAGCTCCCTCCTAACCAGAGGATGACTTGGAGGAGGGACTCTGGTCTTTCCGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTACGATGCAGGGGACAATGTCAAGTTTGGTTTTCCCATGGCATTCACCACGACCATGCTTTCCTGGAGTGTTATCGAGTTTGGTGGCCTAATGCAAGGTGAATTGCAGAATGCTAGAGAGGCCATTCGCTGGGCTACCGATTATCTTCTTAAAGCCACTGCACATCCAGACACCATCTATGTTCAGGTGGGAGATGCTAAGAGGGACCATGCTTGTTGGGAGAGACCTGAAGACATGGATACCCCAAGAAATGTGTACAAGATAGACAAGAACACCCCCGGTTCAGAAGTGGCCGCTGAAACTGCCGCTGCTCTTGCGGCTGCTTCTCTGGTTTTCAGAAGAAGCGACCCCAGATACTCCGAAACCTTAATCAGGAGGGCTATAAGGGTGTTCCAGTTTGCTGATAGATACAGGGGATCCTACAGCAATGGCTTGAAGCCCATTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTATTATGGGGTGCTGCTTGGCTGCACAAGGCTACTAAGAACCCGATGTACCTGCACTACATTCAAGTTAATGGACAAACCCTTGGGGCTGCAGAGTCTGACAATACCTTTGGGTGGGATAACAAGCACGCTGGAGCCAGGATACTTCTTACCAAGGAATTTCTAGTTCAAAAGGTACAATCCCTCCATGAATACAAGGGTCACGCGGACAATTTCATCTGCTCTCTCATTCCAGGAGCTTCTTCAGCCCAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCTCTTCTTTCTTACTCCTAACCTATGCCAAGTACTTAATCTCATCCCACATGGTTGTTAACTGTGGTGGAACCGCCGTAACCCCTAAGAGGCTCCGGGCAATAGCCAAAAGACAGGTGGATTACTTGCTAGGAGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCCCGGAGGATTCACCACAGGGGCTCATCTCTACCGTCCATGGCCGTACACCCCGCAAAGATCCAATGCTCAGCAGGGTTCGGTGTGATGAACTCGCAATCCCCCAATCCCAACATTCTTGTGGGTGCCGTTGTGGGTGGACCCGACCTGCATGATAGGTTTCCAGATGAACGGTCAGACTATGAGCAATCAGAGCCAGCCACTTACATCAACGCACCCCTCGTGGGAGCACTGGCTTATCTTGCTCACTCATTTGGCCAACTCTAG 1530 0.502 MSLFLSFSSLLFLLFLFSATLLYGHAFPAHFNHPIRHRHHPRFATHNYRDALSKSILFFEGQRSGKLPPNQRMTWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMQGELQNAREAIRWATDYLLKATAHPDTIYVQVGDAKRDHACWERPEDMDTPRNVYKIDKNTPGSEVAAETAAALAAASLVFRRSDPRYSETLIRRAIRVFQFADRYRGSYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLHYIQVNGQTLGAAESDNTFGWDNKHAGARILLTKEFLVQKVQSLHEYKGHADNFICSLIPGASSAQYTPGGLLFKMSDSNMQYVTSSSFLLLTYAKYLISSHMVVNCGGTAVTPKRLRAIAKRQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSMAVHPAKIQCSAGFGVMNSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3434 509 FunFam Endoglucanase 44 507 - -
Dere01g3434 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 475 493 IPR033126 -
Dere01g3434 509 SUPERFAMILY Six-hairpin glycosidases 45 507 IPR008928 GO:0005975
Dere01g3434 509 Pfam Glycosyl hydrolase family 9 48 499 IPR001701 GO:0004553|GO:0005975
Dere01g3434 509 PANTHER ENDO-1,4-BETA-GLUCANASE 33 504 - -
Dere01g3434 509 Gene3D - 44 505 IPR012341 GO:0005975
Dere01g3434 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 402 428 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3434 Dere-ChrDere01 48872586 48874859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3434 1 505 Glycoside Hydrolase AT1G02800 75.692 0.0 777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3434 01 48872586 48874859 Dere02g0527 02 5082384 5084556 CCT
Dere01g3434 01 48872586 48874859 Dere01g3434 01 48872586 48874859 ECH