Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0520 ATGTCTGTTCCACTTTTTGGTTTGTTTGGCGACTTCCCAGTGTTTAAGGTGGCTGTGCTTCTTCTGGCATTAAGCACTGCTCTAGAAAGTAATGGGGAGGATATTAATGGAGGACCCTGTAAGCACAGAGCATTGGATGCGAGGCCTCACAGTGTGTCAATTTTAGAGTTTGGAGCAGTAGGAGATGGAAAAACATTGAACACAGTTGCCTTTCAAAATGCAATATTTTATCTCAAGTCCTTTGCTGATAAAGGTGGTGCCCAGTTATATGTTCCATCAGGCACATGGCTCACCGGGAGTTTCAACCTTACCAGCCACCTTACTCTCTTCCTTGCAAGAGGAGCCACCGTTGTTGGATCCCAGGATTTTGAGCACTGGAGTGTAGTGGATCCCCTACCTTCTTACGGTCGAGGAATTGAAGTTCCAGGAGGGAGATATCGCAGCTTAATTTACGGACAGAATATAAGTGACGTGGTGATTACAGGTGATAATGGAACTATTGATGGTCAGGGTTCTGTCTGGTGGGACATGTTCAAATCCCATTCCTTAAATTACAGCCGACCACATCTTGTAGAATTCATAGGTTCTGATGATATCACAATCTCAAATTTAACGTTCTTAAATCCTCCTGCTTGGGACATCCATCCAGTATATTGCAGCAACGTTCAAATTCACAACATAACAGCTCATGCACCAGCTGATTCCCCTTACACCAGTGGTATAGTTCCAGATTCTTCTGATTGTGTTTGCATTAAAAACAGCAATATTAGCAGTGGTCATGATGCAATTGTGCTAAAGAGTGGATGGGATGAGTATGGAGTCTTGTATGGCAGAGCAACCTCGAGTGTCCACATCAGGAGTGTTCTGCTACAATCTTCATCAGGTGCTGGCCTAGCATTTGGAAGTGAGATGTCAGGAGGCATATCCAACATAGTTGCAGAGCAGCTTCATATATTCAATTCCTACGTGGGTATCCAAGTGAAGACAACCAAGGGTAGAGGTGGCTATGTCAAAGACATCTTCATTTCTGATGCAGAACTTGAAAATATTTATCTAGGTTTCAGCATCACTGGATACTATGGTTCACATCCAGACGACAAGTATGATCCAAGTGCGCTTCCGGTTGTTCGTGGCATTACTTATAACGATGTCATTGGTGCAAATATTACTATTGCTGGCAATTTTTCGGGATTAGTTGATTCATCATTCACGTCAATCTGTCTTTCAAATGTGACTTTTTCAATCAGTTCGGAGTCATCTCCTTCATGGTTTTGTTCTAATGTAGCCGGTTTCTCAGAGGAGGTACATCCTGAGCCATGTCCTGATCTCCAGAGCTCCTCCTTTTCTTGCTTTACTTCGCTACATACATCAACGTATGTCTCAAGCTTATGA 1392 0.431 MSVPLFGLFGDFPVFKVAVLLLALSTALESNGEDINGGPCKHRALDARPHSVSILEFGAVGDGKTLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLARGATVVGSQDFEHWSVVDPLPSYGRGIEVPGGRYRSLIYGQNISDVVITGDNGTIDGQGSVWWDMFKSHSLNYSRPHLVEFIGSDDITISNLTFLNPPAWDIHPVYCSNVQIHNITAHAPADSPYTSGIVPDSSDCVCIKNSNISSGHDAIVLKSGWDEYGVLYGRATSSVHIRSVLLQSSSGAGLAFGSEMSGGISNIVAEQLHIFNSYVGIQVKTTKGRGGYVKDIFISDAELENIYLGFSITGYYGSHPDDKYDPSALPVVRGITYNDVIGANITIAGNFSGLVDSSFTSICLSNVTFSISSESSPSWFCSNVAGFSEEVHPEPCPDLQSSSFSCFTSLHTSTYVSSL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0520 463 PANTHER PECTIN LYASE-RELATED 20 449 - -
Dere02g0520 463 Pfam Glycosyl hydrolases family 28 88 429 IPR000743 GO:0004650|GO:0005975
Dere02g0520 463 Gene3D - 40 434 IPR012334 -
Dere02g0520 463 SUPERFAMILY Pectin lyase-like 40 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0520 Dere-ChrDere02 5030668 5033175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0520 17 451 Glycoside Hydrolase AT3G16850 60.092 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3448 01 48995900 49000588 Dere02g0520 02 5030668 5033175 CCT
Dere02g0520 02 5030668 5033175 Dere02g0520 02 5030668 5033175 ECH