Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3448 ATGTTGGCACCTGAGCTCATCTCCCTTAATTCCCCATCTTGCTCTTTCCATGAAAATGCTTCCTCCCATTCCCCTTATTGCTCCCAAAATTTCAGTGTAGTTCTTACACAAGCATATGCAAGAGTACTTTCATCCACACTCCAGTCTGCCCTGGTGGGACCATTTTCCGTGCTAAAATTCAAGGAAATTATGAAGAAAAATATTGTATCAAGCTACAAGGAAATAAAGGAGAAGAGGACAAGAAGGTTGGTTTGTCCGGATATTGCTTTCTCCTCTATGAAAACTGGCCTTGAGATCCTTGTAGTTAAAAGTGTATCTGTGCTATTACTTCTGGCATTAAGCTGTGGCCTAGAAAGTAGAGGGGAGGATAATGGTGGACCATGTAAACCCAATGTATTGGATGCCAGGCCTCACAGCGTGTCAATCTTGGAGTTTGGGGCTGTTGGAGATGGAAAAACTCTAAATACGGTTGCATTTGAAAATGCAGTTTTCTATTTGAAGTCCTTTGCTGACAAAGGTGGTGCTCAGTTATATGTTCCAGCAGGTAGATGGCTTACTGGAAGTTTCAACCTTACCAGCCACCTCACTCTTTTCCTGGAAAGAGGTGCTACCATAGCTGGATCTCAGGATTTTGTACACTGGGGTGTAGATGATCCCCTCCCTTCTTATGGTCGAGGGATTGATGTTCCTGGTGGGAGATATCGCAGCTTGATTTATGGACAGAATTTAAGTGATGTAGTGCTTACAGGTGATAATGGAACTATTGACGGCCAGGGTTCTGTCTGGTGGGAGCTCTTCAGCTCTCATTCCTTAAATTATAGCCGGCCTCATCTTGTGGAATTTATTGCTTCTGATTATATCATAATCTCAAATTTGACATTTCTTAATTCTCCAGCTTGGGACATCCATCCAGTATATTGCAGCAACGTTCAAATCCAGAACATAACAGCTCGTGCTCCAGCTGAATCCCCTTACACAAGTGGTATAGTGCCAGATTCTTCTGAGTATATTTGCATTGAGAGCAGCAATATTAGCACCAGTCATGATGCAATTGTACTAAAAAGTGGCTGGGATCAGTATGGAATTGCCTATGGCAAACCAACTTCGAGTGTCCACATTAGGGGTGTTCATCTACAATCATCATCAGGGGCTGGCCTGGCATTTGGGAGTGAGATGTCGGGAGGTATATCCAACATAATTGTGAAGCAGATTTATATACTCAACTCACCTGTTGGCATTGAACTCAAGACTACCAAGGGTAGAGGTGGCTATATGAAGGACATCTTTATTTCAGATGCTGAATTGAAAAGTATTCACTTGGGTATCAGCATGACAGGAAACTGTGGCTCCCATCCGGATGACAAGTATGATCCAAATGCACTTGCAGATGTTCATGGCATTACTTTTAAGAATGTCGTTGGTGCAAATATTACTATTGCTGGGAAATTTTCAGGAATAGTTGATTCACCCTTCACAGCAATATGTCTTTCAAACATGACTTTTTCCAACAGTTCTGAGTCGTCATCATTTCCTTCATGGTTTTGTTCTCATGTCAGGGGTTTCTCTGAGGAGGTGTTTCCTGAGCCATGCCCTGATCTTCGGAGCTCATATTTGAAGTTTTCCTTTTCATGCTTTTCTTCCCAATATCCATCCTTTAGTTATGTCTCGAGCTTATAA 1677 0.4228 MLAPELISLNSPSCSFHENASSHSPYCSQNFSVVLTQAYARVLSSTLQSALVGPFSVLKFKEIMKKNIVSSYKEIKEKRTRRLVCPDIAFSSMKTGLEILVVKSVSVLLLLALSCGLESRGEDNGGPCKPNVLDARPHSVSILEFGAVGDGKTLNTVAFENAVFYLKSFADKGGAQLYVPAGRWLTGSFNLTSHLTLFLERGATIAGSQDFVHWGVDDPLPSYGRGIDVPGGRYRSLIYGQNLSDVVLTGDNGTIDGQGSVWWELFSSHSLNYSRPHLVEFIASDYIIISNLTFLNSPAWDIHPVYCSNVQIQNITARAPAESPYTSGIVPDSSEYICIESSNISTSHDAIVLKSGWDQYGIAYGKPTSSVHIRGVHLQSSSGAGLAFGSEMSGGISNIIVKQIYILNSPVGIELKTTKGRGGYMKDIFISDAELKSIHLGISMTGNCGSHPDDKYDPNALADVHGITFKNVVGANITIAGKFSGIVDSPFTAICLSNMTFSNSSESSSFPSWFCSHVRGFSEEVFPEPCPDLRSSYLKFSFSCFSSQYPSFSYVSSL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3448 558 SUPERFAMILY Pectin lyase-like 127 534 IPR011050 -
Dere01g3448 558 Gene3D - 129 519 IPR012334 -
Dere01g3448 558 PANTHER PECTIN LYASE-RELATED 109 537 - -
Dere01g3448 558 Pfam Glycosyl hydrolases family 28 176 500 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3448 Dere-ChrDere01 48995900 49000588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3448 105 546 Glycoside Hydrolase AT3G16850 59.368 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3448 01 48995900 49000588 Dere02g0520 02 5030668 5033175 CCT
Dere01g3448 01 48995900 49000588 Dere01g3448 01 48995900 49000588 ECH