Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0079 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAGGAGAAGTTTAAGGAGTCGGTGCACAAACGGGGAATAACGGAGATAAGCAGATCAAGAAGAGAAATGTTGGAAGGAACTTTTTCTGATTTATGTCGACTCTTAAGGCTGGAGAAAGATTCTGGGTTTTTCTTCAACATGAAGTACTTTGAAGAAAAAGTTCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGTCTGGATTTACCAAAGTTGATGATAATAGATACTCTATGAAAATATTCTTTGAAATCAGGAAACAAAAATATCTGGAAGCTCTTGATCGGCAAGACAGGTCAAAGGCTGTTGAACTATTAGTTACTGATTTAAAAGTGTTCTCCACTTTCAATGAGGATCTGTACAAAGAAATTACCCAGTTGTTAACCCTTAATAATTTCAGAAAAACTGATGATGTTGCAATTCAAAAGCCTCAGTTTGCAGACTTTGTTCCCGCTACTATTACTGATGCAGTATCAGACTCTAGTCTGTTGGGAGATGGAACATGCCTGAAGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTTAAAAAACTCATAGAAGCAAATCCTCTTTTTCGTGATAAACTTCTTTTCCCTACTCTTAAGTCATCAAGATTGCGGACACTAATCAATCAAAGTTTGAACTGGCAGCACCAACTTTGCAAAAACCCTCGGCCAAACCCAGATATCAAGACTTTATTCACTGATCACACGTGTACACCACCTAATGGTCCTCTGGCACCCACACCTGTCAATCTTCCTGTTGCTGCAGTTGCAAAGCCTGCTACTTATACTTCACTTGGATCTCATGGTCCCTTTCCACCTGCTGCTGCAGGAACTGCTAATGCTAATGCCTTAGCTGGTTGGATGGCCAATGCCTCTGCTTCATCATCTGTTCAAGCAGCTGTTGTAACTGCATCATCGATGCCTGTTCCACAGAATCAAGTGTCTATCTTGAAACGTCCAAGAACACCTCCAGCAACTCCTGGCATGGTTGATTATCAGAATCCTGATCATGAACAACTAATGAAAAGACTTCGGCCGGCTCATGCTGTAGAGGAGATTTCGTATCCTATAGCTCGGCAAGCTTCTTGGTCACTGGAGGATTTACCAAGAACAGTGGCTTTAACTTTGCATCAAGGATCCTCAGTGTCAAGCATGGATTTTCATCCTTCTCATCACACATTGCTTCTTGTTGGTTCTACTAATGGGGAAATTACCCTTTGGGAACTTGGGTTGCGTGAAAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATGTCAACATGCTCATTGGCATTTCAGGCAGCTGCTGTTGTCAAAGATGTACCTATTTCCGTTAGCCGTGTTACTTGGAGCCCAGATGGAAATTGTGTGGGTGTTGCATTTACCAAACATCTGATTCACTTGTATACCTATACTGGTCCAAATGAACTAACCCAGCGTCTAGAGATTGATGCCCATGCTGGTGGTGTGAATGACTTGGCATTCGCTCATCCCAATAAACAACTATGCATTGTGACTTGTGGAGATGATAAGTCGATAAAGGTGTGGGAGTTGAATGGGCGAAGACTGTTTATCTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCATAAAGAGAGCATTCAGGATTACATCATGGTTGCATTGGTTTTCATATTTTCAACTGCCGTTGATGGCAAAATAAAGGCCTGGTTGTATGATAACATGGGTTCTAGAGTTGACTATGATGCACCTGGTCACTGGTGTACCACAATGCTTTACAGTGCTGATGGCAGTAGATTGTTTTCTTGTGGGACTAGTAAAGATGGAGAATCTTTTCTGGTTGAATGGAATGAAAGTGAAGGAGCCATCAAGAGGACATACAAAGGGTTCAGGAAGAAATCTGCTGGTGTGGTGCAGTTTGATACAACCCAAAATCTCTTCTTGGCGGCTGGTGAAGATGGCCAAATAAAGTTTTGGGATATGGACAATGTTAATCTTCTAACAAGCACTGATGCGGAGGGTGGACTTCAGAGCCTTCCGCGCTTGAGATTTAATAAAGAAGGAAATCTTCTTGCTGTTACTACTGCGGAAAACGGATTTAAGATACTTGCTAATGCTGTTGGTCTTAGATCCCTGAGAACTATAGACACTCCAGTATTTGAGGCATTAAGGTCACCCATGGAATCTGCTGCAATCAAGGTATCTGGCTCCTCTGCTGTTAATGTTAGTCCTGTCAACTTGAAAATTGAAAGGAGCTCCCCTGTCATGCCTTCTTCAATTCTTAATGGAGTTGATCCTACGGGTCGAAGTGTGGAAAAACCAAGAACTGTTGAAGATGTAATAGATAGAGCTAAATCATGGCAACCGTCTGAAATTGTGGAGCCTGTCCAATGCCGGTTAGTTAACTTGCCTGACAGCGCTGATTCTTCCAGCAAGGTAGTTCGACTTCTATATACAAATTCTGGTGTTGGTGTTTTAGCTCTTGGGTCAAATGGTACTCAGAAATTGTGGAAGTGGGCTCGCAATGAACAGAATCCAACTGGGAAGGCAACTGCCAGCGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCAGGCGTTAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGACTCGTACGTTATGTCTGCCTGTGGTGGAAAGGTTTCACTATTTAACATGATGACGTTCAAGGTCATGACAACATTCATGCCACCACCTCCTGCCTCTACCTTCTTAGCTTTCCATCCCCAGGATAACAATATCATAGCCATTGGGATGGAGGATTCAGCTATTCACATTTACAATGTTAGAGTGGACGAGGTGAAATCAAAACTGAAGGGTCACCAAAAGCGTATTACTGGTTTAGCCTTCTCAACCAATCTCAACATACTGGTTTCATCTGGTGCTGATGCTCAACTTTGTATTTGGAGCATTGATACATGGGAGAAAAGAAAATTGATGAGGATACAATTACCTCCGGAAAAGCCACCTGTTGGTGATACACGAGTGCAGTTCCATTGTGACCAACTTCGCCTCTTGGTGGTCCATGAGGCTCAGCTGGCAATATATGATGGCTCCAAGATGGAATGCATTCGGCAGTGGGTTCCGCAAGATGTTCTGTCTGCTCCGATAACATATGCAGCTTATTCGTCCAACAGTCAGTTAATTTATGCTACCTTTTCCGATGGTAACATTGGGGTCTTTGACGCTGACAGCTTGCGATTAAGATGTCGTATTGCTCCATCAGCATACTTGTCACAGGCAGCTTTAAATGGAAGCCAATCAGTGTACCCTCTGGTTGTTGCGGCTCATCCAACAGAGGCCAACCAGTTTGCTGTTGGGTTCAGTGACGGGTCGGTGAAGGTGATGGAGCCCACAGAATCAGAGGGTAAGTGGGGATCCAGTCCACCAATAGATAATGGAATATTGAGCGGTAGGACAGCGTCAACTTCTACAGCAAGCAACCACACTCCTGATCAGCCACAACGATAG 3609 0.4336 MSSLSRELVFLILQFLEEEKFKESVHKRGITEISRSRREMLEGTFSDLCRLLRLEKDSGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDRSKAVELLVTDLKVFSTFNEDLYKEITQLLTLNNFRKTDDVAIQKPQFADFVPATITDAVSDSSLLGDGTCLKENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPATYTSLGSHGPFPPAAAGTANANALAGWMANASASSSVQAAVVTASSMPVPQNQVSILKRPRTPPATPGMVDYQNPDHEQLMKRLRPAHAVEEISYPIARQASWSLEDLPRTVALTLHQGSSVSSMDFHPSHHTLLLVGSTNGEITLWELGLRERLVSKPFKIWDMSTCSLAFQAAAVVKDVPISVSRVTWSPDGNCVGVAFTKHLIHLYTYTGPNELTQRLEIDAHAGGVNDLAFAHPNKQLCIVTCGDDKSIKVWELNGRRLFIFEGHEAPVYSICPHHKESIQDYIMVALVFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYKGFRKKSAGVVQFDTTQNLFLAAGEDGQIKFWDMDNVNLLTSTDAEGGLQSLPRLRFNKEGNLLAVTTAENGFKILANAVGLRSLRTIDTPVFEALRSPMESAAIKVSGSSAVNVSPVNLKIERSSPVMPSSILNGVDPTGRSVEKPRTVEDVIDRAKSWQPSEIVEPVQCRLVNLPDSADSSSKVVRLLYTNSGVGVLALGSNGTQKLWKWARNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSAIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCIWSIDTWEKRKLMRIQLPPEKPPVGDTRVQFHCDQLRLLVVHEAQLAIYDGSKMECIRQWVPQDVLSAPITYAAYSSNSQLIYATFSDGNIGVFDADSLRLRCRIAPSAYLSQAALNGSQSVYPLVVAAHPTEANQFAVGFSDGSVKVMEPTESEGKWGSSPPIDNGILSGRTASTSTASNHTPDQPQR 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0079 1202 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 696 IPR001680 GO:0005515
Dere02g0079 1202 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 447 IPR001680 GO:0005515
Dere02g0079 1202 ProSitePatterns Trp-Asp (WD) repeats signature. 534 548 IPR019775 -
Dere02g0079 1202 SMART ctlh 60 118 IPR006595 -
Dere02g0079 1202 MobiDBLite consensus disorder prediction 1179 1202 - -
Dere02g0079 1202 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1184 IPR027728 GO:0006355
Dere02g0079 1202 FunFam Topless-related protein 3 803 1037 - -
Dere02g0079 1202 ProSiteProfiles Trp-Asp (WD) repeats profile. 984 1025 IPR001680 GO:0005515
Dere02g0079 1202 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 406 502 IPR011047 -
Dere02g0079 1202 Gene3D - 1033 1176 IPR015943 GO:0005515
Dere02g0079 1202 SUPERFAMILY WD40 repeat-like 1041 1165 IPR036322 GO:0005515
Dere02g0079 1202 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 60 118 IPR006595 -
Dere02g0079 1202 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 474 1021 IPR011047 -
Dere02g0079 1202 Gene3D - 815 1032 IPR015943 GO:0005515
Dere02g0079 1202 SMART WD40_4 549 598 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 934 974 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 647 687 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 1066 1108 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 461 500 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 1122 1163 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 399 438 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 504 547 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 601 644 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 977 1016 IPR001680 GO:0005515
Dere02g0079 1202 SMART WD40_4 895 931 IPR001680 GO:0005515
Dere02g0079 1202 Gene3D - 636 744 IPR015943 GO:0005515
Dere02g0079 1202 MobiDBLite consensus disorder prediction 1163 1202 - -
Dere02g0079 1202 Gene3D - 383 635 IPR015943 GO:0005515
Dere02g0079 1202 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 984 1019 - -
Dere02g0079 1202 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 549 IPR001680 GO:0005515
Dere02g0079 1202 Pfam WD domain, G-beta repeat 983 1016 IPR001680 GO:0005515
Dere02g0079 1202 Pfam WD domain, G-beta repeat 513 546 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0079 Dere-ChrDere02 818806 828131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0079 512 729 Miscellaneous Gene Families AT5G08390 24.775 2.53e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3721 01 51423193 51438974 Dere02g0079 02 818806 828131 CCT
Dere02g0079 02 818806 828131 Dere02g0079 02 818806 828131 ECH