Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3721 ATGTCTTCTTTAAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAATCTGTGCACAAGCTTGAGAAAGAGTCCGGGTTTTTCTTTAACATGAAGTACTTTGAGGAAAAAGTTCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTATCAGGGTTTACTAAAGTTGATGATAATAGATACTCCATGAAGATATTCTTTGAAATCAGGAAGCAAAAATATCTGGAAGCGCTTGATCGGCAAGACAAGGCGAAGGCTGTTGAGATATTAGTAAATGATTTAAAAGTGTTCTCCACTTTCAATGAGGATCTATATAAAGAAATCACCCAGCTGTTAACTCTTAATAATTTCAGGGAAAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACAGCTCGAAGCATCATGTTGATAGAGCTGAAAAAATTGATAGAGGCAAATCCTCTTTTTCGTGATAAGCTTCTCTTCCCCACTCTTAAATCATCAAGATTGAGGACATTAATCAATCAAAGTTTGAATTGGCAGCACCAGCTTTGCAAAAATCCAAGGCCAAACCCAGATATTAAGACTTTATTTACAGATCACACATGTTCACCTCCTAATGGTCCTCTAACACCCGCACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTGCCTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCAGCCACTGCTAATGCTAATGCTTTAGCTGGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCCGTTGTCACTGCATCATCCATCCCAGTTGCTCAGAATCAAGTGTCTATCATGAAACGTCCAAGAACACCTCCAGCAACTCCTGGCATGGTTGATTATCAGAATCCTGATCATGACCAATTAATGAAAAGGCTTCGGCCTGCTCATTCTGTTGAGGAGGTTTCCTATCCCGCAGCTCGACAAGCTTCTTGGTCGCTGGATGATCTGCCAAGAACAGTGGCTATGACTTTGCATCAAGGAGCCTCTGTTACAAGCATGGATTTTCATCCTTCACACCAGACATTGCTTCTTGCTGGTTCTAATAATGGTGAAATTACCTTATGGGAACTTTCGTTACGCGAGAGGTTGGTTTCAAAACCATTCAAGATATGGGAATTGTCTGCATGCTCAATGGCTTTTCAGGCAGCTGTCGTCAAGGATGGACCAATTTCCGTCAGCTGTGTTACGTGGAGCCCAGATGGAAATTTTGTGGGTGTTGCATTTACCAAACATTTGATTCATTTGTATGCCTGCACTGGGTCAAATGAACTGAACCAGCGTTTAGAGATTGATGCCCATACTGGTGGCGTAAATGACTTGGCATTTGCTCATCCAAATAAACAACTATGTATTGTGACTTGTGGAGATGATAAGTTGATCAAGGTGTGGGAGTTAAATGGACGAAGACTATTTAACTTTGAGGGGCATGAAGCACCTGTGTATTCTATTTGTCCTCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCATTGATGGAAAAATAAAGGCATGGCTGTATGATAACATGGGTTCTAGAGTTGACTATGATGCTCCAGGTCACTGGTGCACAACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGAACAAGTAAAGATGGAGAATCTTTCCTAGTTGAATGGAATGAAAGTGAAGGTGCCATTAAGAGGACGTATAATGGGTTTCGAAAGAAATCTACTGGTGTTGTGCAGTTTGACACAACCAAAAATCGCTTTTTGGCTGCTGGTGAAGATGGTCAAATAAAGTTTTGGGATATGGACAATGTTAATCTTCTAACAAGCACTGATGCAGAGGGTGGACTGCAGAACCTTCCGCGTTTGAGATTTAATAAGGAAGGAAATCTTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTTGCAAATGCTATTGGTCTTAGATCCTTAAGAGCGATGGAAACTCCAGCATTTGAGGCATTGAGGTCTCCCATAGAATCTGCTGCAATCAAGGTATCTGGCTCCCCTGCTGTAAATGTCAGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCTTCTCCGATCCTTAATGGAGTTGACCCTATGGGTCGAAGTGTGGAGAAACCAAGAACCATGGAAGATGTAATAGATAGAACAAAACCATGGCAGCTTTCTGAAATTGTGGAAGCTGTCCAATGTAGATTAGTCACCATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGACTTCTATATACGAATTCTGGTGTTGGTGTCTTGGCACTTGGGTCCAATGGTATTCAGAAGCTGTGGAAATGGACTCGCAATGAGCACAATCCCACTGGGAAGGCCACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATATTTCAGGTGTCAACCTTGAAGAAGCAGTTCCCTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAATATGATGACATTCAAGGTAATGACAACATTCATGCCACCGCCTCCTGCCTCTACTTTCCTAGCTTTCCATCCCCAGGATAACAACATCATAGCTATTGGGATGGAGGATTCATCTATTCATATTTATAATGTTAGAGTGGATGAGGTCAAATCGAAACTGAAGGGTCACCAGAAGCGTATCACTGGTTTAGCCTTTTCGACCAATCTTAACATACTGGTTTCATCTGGCGCTGATGCTCAACTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATGCCTGTTGGAAAGGCTCCTGTTGGTGATACCAAAGTGCAGTTCCATTCTGACCAACTTCGATTATTAGTAGTTCATGAGACACAGTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGGCAGTGGGTTCCACATGAGGTTCTGCCTGCTCCAATATCATATGCAGCTTATTCAAGCAACAGTCTGTTAATATATGCTACCTTTTGTGATGGTAACATTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGTCGTATTGCTCCGTCAGCATACTTATCACAGGCCGCATTAAGTGGAAGCCAAGCTGTGTACCCTCTTGTTGTTGCTGCTCATCCACAAGAACCCCATCAGTTCGCTGTTGGAATGACTGATGGATCCGTCAAAGTATTAGAGCCTACTGAATCAGAGGGTAAATGGGGGTCTACTCCTCCTATGGATAATGGAATGTTAAACAGTAGGCCAGGACCATCTTCTACTCCAAGCAACCACACGCCTGATCAGGCACAAAGATAA 3378 0.4284 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVNDLKVFSTFNEDLYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLTPAPVNLPVAAVAKPAAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASSIPVAQNQVSIMKRPRTPPATPGMVDYQNPDHDQLMKRLRPAHSVEEVSYPAARQASWSLDDLPRTVAMTLHQGASVTSMDFHPSHQTLLLAGSNNGEITLWELSLRERLVSKPFKIWELSACSMAFQAAVVKDGPISVSCVTWSPDGNFVGVAFTKHLIHLYACTGSNELNQRLEIDAHTGGVNDLAFAHPNKQLCIVTCGDDKLIKVWELNGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTKNRFLAAGEDGQIKFWDMDNVNLLTSTDAEGGLQNLPRLRFNKEGNLLAVTTVDNGFKILANAIGLRSLRAMETPAFEALRSPIESAAIKVSGSPAVNVSPVSCKVERSSPVRPSPILNGVDPMGRSVEKPRTMEDVIDRTKPWQLSEIVEAVQCRLVTMPESADASSKVVRLLYTNSGVGVLALGSNGIQKLWKWTRNEHNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSMPVGKAPVGDTKVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWVPHEVLPAPISYAAYSSNSLLIYATFCDGNIGVFDADSLRLRCRIAPSAYLSQAALSGSQAVYPLVVAAHPQEPHQFAVGMTDGSVKVLEPTESEGKWGSTPPMDNGMLNSRPGPSSTPSNHTPDQAQR 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3721 1125 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Dere01g3721 1125 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1106 IPR027728 GO:0006355
Dere01g3721 1125 FunFam TOPLESS-related 3 402 699 - -
Dere01g3721 1125 Gene3D - 326 561 IPR015943 GO:0005515
Dere01g3721 1125 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dere01g3721 1125 SUPERFAMILY WD40 repeat-like 829 1087 IPR036322 GO:0005515
Dere01g3721 1125 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Dere01g3721 1125 Pfam WD domain, G-beta repeat 448 481 IPR001680 GO:0005515
Dere01g3721 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Dere01g3721 1125 Gene3D - 562 671 IPR015943 GO:0005515
Dere01g3721 1125 MobiDBLite consensus disorder prediction 1087 1125 - -
Dere01g3721 1125 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Dere01g3721 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 484 IPR001680 GO:0005515
Dere01g3721 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Dere01g3721 1125 SMART ctlh 34 92 IPR006595 -
Dere01g3721 1125 Gene3D - 829 1098 IPR015943 GO:0005515
Dere01g3721 1125 SMART WD40_4 861 901 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 441 482 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 904 943 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 574 614 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 989 1031 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 528 571 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 396 435 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 822 858 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 484 525 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 335 374 IPR001680 GO:0005515
Dere01g3721 1125 SMART WD40_4 1045 1086 IPR001680 GO:0005515
Dere01g3721 1125 SUPERFAMILY WD40 repeat-like 327 655 IPR036322 GO:0005515
Dere01g3721 1125 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Dere01g3721 1125 SMART Lish 4 36 IPR006594 GO:0005515
Dere01g3721 1125 MobiDBLite consensus disorder prediction 1100 1125 - -
Dere01g3721 1125 FunFam Topless-related protein 3 730 964 - -
Dere01g3721 1125 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Dere01g3721 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3721 Dere-ChrDere01 51423193 51438974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3721 447 656 Miscellaneous Gene Families AT5G08390 24.766 4.20e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3721 01 51423193 51438974 Dere02g0079 02 818806 828131 CCT
Dere01g3721 01 51423193 51438974 Dere01g3721 01 51423193 51438974 ECH