Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3645 ATGTCCGTTGCAGCGACTTCTCCCAGTCTGACATCGGAGTTGGTATTTGACAACGTCGAGGCGCTCCTAGTTGACGGCTCTAAGCTTGGGACTTGGGATACGACAATGGATACCTTCCTGTTCACTTCTGAGTCAGTAAACGAGGGTCATCCTGACAAGCTCTGTGATCAGATTTCTGACGCAGTTCTTGACGCTTGCTTGGAGCAAGATTCAGAGAGCAAGGTCGCCTGCGAGACCTGCTCCAAGACTAACTTGGTCATGGTGTTTGGAGAGATCACCACAAAAGCCAATGTAGATTATGAGAAGATTGTTCGCGACACATGCAGATCCATTGGCTTTACCTCCAACGATGTAGGCCTTGATGCTGACAATTGCAAGGTCCTGGTCTGCATTGAGCAACAAAGCCCTGATATTGCACAGGGAGTACATGGTCATCTCACAAAACGACCTGAAGAGATAGGTGCTGGTGACCAAGGTCACATGTTTGGCTACGCCACAGATGAAACTCCTGACCTAATGCCTCTTAGCCATGTCCTTGCTACCAAGCTTGGGGCTCGCCTGACTGATGTACGCAAGAATGGGACATGCCCTTGGCTAAGACCTGATGGAAAAACCCAAGTCACTGTGGAATATTACAATGACAATGGTGCTATGGTTCCAGTTCGTGTGCATACTGTTTTAATTTCCACACAGCATGATGAAACTGTTACTAATGATGAAATTGCTGCTGATTTAAAAGAGCATGTGATTAAGCCAGTGATTCCTGAGAAGTACTTGGATGAGAAGACCATATTCCATTTGAATCCATCTGGGCGTTTTGTGATTGGGGGGCCTCATGGTGATGCAGGTCTTACTGGAAGGAAAATCATAGTTGATACTTATGGTGGTTGGGGAGCACATGGTGGTGGTGCTTTCTCGGGGAAAGACCCTACTAAGGTGGATAGGAGTGGAGCCTATGTTGCTAGGCAGGCCGCCAAGAGTATTGTGGCCAATGGACTTGCTAGAAGGTGCATTGTGCAAATCTCATATGCAATTAGTGTTCCTGAGCCATTATCTGTGTTTGTTGATACTTACGGGACTGGGAAGATTCCAGACAAGGAGATTCTAAAGATTGTGAAGGAGAACTTTGATTTTAGGCCTGGGATGATCTCTATCGATTTGGATCTCAAGAGGGGTGGAAACGGCAGGTTCTTGAAAACTGCTGCTTATGGCCACTTCGGAAGAGATGACCCTGACTTCACGTGGGAGTTGGTGAAACCTCTCAAGTGGGACAAGCCCCAAGAATAA 1287 0.4709 MSVAATSPSLTSELVFDNVEALLVDGSKLGTWDTTMDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDSESKVACETCSKTNLVMVFGEITTKANVDYEKIVRDTCRSIGFTSNDVGLDADNCKVLVCIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPDLMPLSHVLATKLGARLTDVRKNGTCPWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVANGLARRCIVQISYAISVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMISIDLDLKRGGNGRFLKTAAYGHFGRDDPDFTWELVKPLKWDKPQE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3645 428 NCBIfam methionine adenosyltransferase 40 421 IPR002133 GO:0004478|GO:0005524|GO:0006556
Dere01g3645 428 ProSitePatterns S-adenosylmethionine synthase signature 1. 154 164 IPR022631 GO:0004478|GO:0006556
Dere01g3645 428 Pfam S-adenosylmethionine synthetase, central domain 152 273 IPR022629 GO:0004478|GO:0006556
Dere01g3645 428 PIRSF MAT 33 426 IPR002133 GO:0004478|GO:0005524|GO:0006556
Dere01g3645 428 SUPERFAMILY S-adenosylmethionine synthetase 275 423 IPR022636 GO:0004478|GO:0006556
Dere01g3645 428 CDD S-AdoMet_synt 40 416 - -
Dere01g3645 428 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 36 425 IPR002133 GO:0004478|GO:0005524|GO:0006556
Dere01g3645 428 Gene3D - 39 277 - -
Dere01g3645 428 Pfam S-adenosylmethionine synthetase, C-terminal domain 275 416 IPR022630 GO:0004478|GO:0006556
Dere01g3645 428 Gene3D - 46 314 - -
Dere01g3645 428 FunFam S-adenosylmethionine synthase 297 416 - -
Dere01g3645 428 SUPERFAMILY S-adenosylmethionine synthetase 150 274 IPR022636 GO:0004478|GO:0006556
Dere01g3645 428 Gene3D - 152 416 - -
Dere01g3645 428 Pfam S-adenosylmethionine synthetase, N-terminal domain 39 136 IPR022628 GO:0004478|GO:0006556
Dere01g3645 428 FunFam S-adenosylmethionine synthase 171 276 - -
Dere01g3645 428 SUPERFAMILY S-adenosylmethionine synthetase 38 144 IPR022636 GO:0004478|GO:0006556
Dere01g3645 428 Hamap S-adenosylmethionine synthase [metK]. 37 428 IPR002133 GO:0004478|GO:0005524|GO:0006556
Dere01g3645 428 ProSitePatterns S-adenosylmethionine synthase signature 2. 301 309 IPR022631 GO:0004478|GO:0006556
Dere01g3645 428 FunFam S-adenosylmethionine synthase 46 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3645 Dere-ChrDere01 50719859 50723004 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3645 01 50719859 50723004 Dere02g0427 02 4242472 4243650 ECH
Dere01g3645 01 50719859 50723004 Dere01g3645 01 50719859 50723004 ECH