Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3521 ATGGTTGTGCCTTCTTCACATTCCATGAGAACCAAGAAAACAAATGCTGTGGGAATTCCGACGGTGGACCTTTCCATGGAAAGGTCAGAGTTATCGGAATTGGTAGTAAAAGCCAGCGAAGAATATGGTTTCTTCAAGGTGGTCAACCACGGCGTGCCAAAGGCGGTCATTTCCAGATTGGAAGATGAAGGAATCGAATTCTTTTCCAAATCCACCTCCGAGAAGCGACAGGCTGGTCCTGCCGCGCCTTTTGGTTATGGTTGCAGAAACATTGGCCCCAACGGCGATATGGGTGACCTCGAGTATCTCCTTCTTCATACAAATCCTCTCTCCATCTCTGACAGATCCAAAACTATCTCTAACAACCCTACCAACTTCAGTTGTGCGGTGAATGATTACATAGAAGCAACGAGGGAACTAGCATGCGAGATCGTCGATCTCGTGGCAGAGGGGCTGTGGGTCCCGGACAAGTTCGCGGTGAGCAGGCTCATCAGAGACGTCCACAGCGACTCAGTGCTGAGGATCAATCACTACCCTCCCACCACCACCACCACCACCAACAAGTGGGACCCCTCTAAAGGGAGTAGTAATAGCATTGGCTTTGGGGAGCATTCGGACCCTCAGATCTTGACAATCCTACGGTCCAACGAAGTGGGGGGGCTTCAGATCTGCACCCAGGACGGCCTCTGGATCCCTGTGCCCCCAGACCCCACTGAGTTCTTCGTCATGGTTGGTGATGCCCTCCAGGCGATGACAAATGGGAGGCTCCGAAGCGTGAGACACAGAGTATTGACCAACGCGAGGAAGGCAAGAATGTCAGTGATGTACTTTGCAGCACCGCCTCTGAACTCGTGGATAACTCCCCTGCCCAAGATGGTGTCACCCCACAACCCTTCTCTCTACAAGCCCTTCACCTGGGCTCACTACAAGCAAGCCGCCTATTCCCTTCGACTCGGACACTCCAGGCTCGATCTCTTCAAGGCTAAAGACCCCCATCTTCTAACTTCTCCCTCACACCTCCACTATTGA 1029 0.5248 MVVPSSHSMRTKKTNAVGIPTVDLSMERSELSELVVKASEEYGFFKVVNHGVPKAVISRLEDEGIEFFSKSTSEKRQAGPAAPFGYGCRNIGPNGDMGDLEYLLLHTNPLSISDRSKTISNNPTNFSCAVNDYIEATRELACEIVDLVAEGLWVPDKFAVSRLIRDVHSDSVLRINHYPPTTTTTTNKWDPSKGSSNSIGFGEHSDPQILTILRSNEVGGLQICTQDGLWIPVPPDPTEFFVMVGDALQAMTNGRLRSVRHRVLTNARKARMSVMYFAAPPLNSWITPLPKMVSPHNPSLYKPFTWAHYKQAAYSLRLGHSRLDLFKAKDPHLLTSPSHLHY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3521 342 PRINTS Isopenicillin N synthase signature 240 266 - -
Dere01g3521 342 PRINTS Isopenicillin N synthase signature 35 52 - -
Dere01g3521 342 PRINTS Isopenicillin N synthase signature 204 225 - -
Dere01g3521 342 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 80 IPR026992 -
Dere01g3521 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 168 288 IPR005123 -
Dere01g3521 342 FunFam Gibberellin 2-beta-dioxygenase 2 2 317 - -
Dere01g3521 342 Pfam 2OG-Fe(II) oxygenase superfamily 170 279 IPR044861 -
Dere01g3521 342 SUPERFAMILY Clavaminate synthase-like 10 319 - -
Dere01g3521 342 Gene3D - 2 317 IPR027443 -
Dere01g3521 342 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 19 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3521 Dere-ChrDere01 49602484 49605438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3521 10 327 Glycosyltransferase AT5G59530 28.701 5.75e-29 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3521 01 49602484 49605438 Dere02g0447 02 4394833 4397042 CCT
Dere01g3521 01 49602484 49605438 Dere01g3521 01 49602484 49605438 ECH