Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3340 ATGACGGGGCTTGTGATGGTGACGAAGGGCGGAGGGTGCGGTGGAGGGAAGGGAGCGAAGAGAGGAAGAACCGCCGCCGAAGAAGAGCAGAACCAGCTGTCCCTCGTCGCATTCCTCTTGGCCGCTTTGAGGAAGTCCATGGTGGCATGTCGGGTGGATCGGCCCGACGATGTCATCCCTACCGTTCATCACATGGAAATCGGATGGCCCACTAACGTTCAGCACATTGCTCATGTCACTTTCGATCGCTTCAATGGCTTTCTGGGTCTCCCCGTCGAGTTCGAGGTCGAGATCCCGGGTCGGGTTCCCAGTGCTAGTGTAAGTGTATTTGGCGTCTCAGCAGAATCAATGCAGTGTTCTTATGATTCAAAAGGAAATAGTGTCCCCACTATTCTGTTACTTATGCAGGAGCGGTTATACTCGCAGGGAGGCCTAAAGCGCGAAGGAATATTTCGCATAAATCCAGAAAACAGTCAAGAAGAACATGTAAGGGACCAGTTGAATAGGGGAATTGTCCCGGATGACATTGATGTCCACTGTTTGGCAGGCCTAATTAAAGCCTGGTTCCGAGAGCTTCCTTCAGGAGTGCTAGATGGGCTTTCCCCCGAACAGGTTCTTCAGTGCAACACAGAAGAAGCATCTGTTGAGCTTGTGAAGCAGCTAAAACCAACTGAAGCTGCCTTGCTCAACTGGGCTATTGATCTCATGGCTGATGTTGTAGAGGAGGAGGAATACAACAAAATGAATGCAAGAAATATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCATTAACGGCTCTGATGCACGCTGTCCAAGTGATGAATTTACTCAAGACCCTCATAATGAAGACTCTCAGAGAACGAGAGGAAACAACGACAGGAGGGTATTCGCCCATGTCATTTGGTTCATCAGATCGCCAATCTGAGGAGGAATATGACAGTCAGCAAGAAATGGAGACCAGTGGTGAGTTGCGAGGGAGCAAGTCAGATTATGATGAACATGTTCACTACAGCCATAGCAGCGAGGAGGAAGGTGGGGCCGAATCTTTAAGTGACATAGAGGAATGCTTCTTGAAGCAGTTGGATGAGAACCCAAAAGGATACTCGGAAGACCCTGTCGGATATTTGCAAGAGGACTGTGCTAGCCCCAGAAGTTGCTCTGGCTATAACATGGAAGCTGCTATCTCATCTACTGATAGCAAAAGCGAGAATTCCTGCTTGAGTTCCACTTATGGCGGAAAATCAAGGACAGCTCAGACTGCTGTGGGATCAAATGTTGACACAAATAGTCCATCAATAGCATGTACAGGCAGCAATGATGTGGAGATGATGGTTAAATTTACAGATTCTGTAGCACCAGTGCCCTTGTTTACCTCCAATTAG 1395 0.4824 MTGLVMVTKGGGCGGGKGAKRGRTAAEEEQNQLSLVAFLLAALRKSMVACRVDRPDDVIPTVHHMEIGWPTNVQHIAHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKREGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEASVELVKQLKPTEAALLNWAIDLMADVVEEEEYNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETTTGGYSPMSFGSSDRQSEEEYDSQQEMETSGELRGSKSDYDEHVHYSHSSEEEGGAESLSDIEECFLKQLDENPKGYSEDPVGYLQEDCASPRSCSGYNMEAAISSTDSKSENSCLSSTYGGKSRTAQTAVGSNVDTNSPSIACTGSNDVEMMVKFTDSVAPVPLFTSN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3340 464 MobiDBLite consensus disorder prediction 401 433 - -
Dere01g3340 464 CDD CRIB 65 105 - -
Dere01g3340 464 ProSiteProfiles Rho GTPase-activating proteins domain profile. 112 293 IPR000198 GO:0007165
Dere01g3340 464 PANTHER MKIAA1688 PROTEIN 26 354 IPR044785 GO:0005096
Dere01g3340 464 MobiDBLite consensus disorder prediction 292 354 - -
Dere01g3340 464 SMART PBD_5 67 101 IPR000095 -
Dere01g3340 464 FunFam Rho GTPase-activating protein 5 97 290 - -
Dere01g3340 464 Gene3D Rho GTPase activation protein 99 293 IPR008936 -
Dere01g3340 464 ProSiteProfiles CRIB domain profile. 67 80 IPR000095 -
Dere01g3340 464 MobiDBLite consensus disorder prediction 327 350 - -
Dere01g3340 464 Pfam P21-Rho-binding domain 66 95 IPR000095 -
Dere01g3340 464 SUPERFAMILY GTPase activation domain, GAP 108 286 IPR008936 -
Dere01g3340 464 CDD RhoGAP 129 285 - -
Dere01g3340 464 SMART RhoGAP_3 126 289 IPR000198 GO:0007165
Dere01g3340 464 Gene3D CRIB domain 62 98 IPR036936 -
Dere01g3340 464 Pfam RhoGAP domain 129 263 IPR000198 GO:0007165
Dere01g3340 464 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3340 Dere-ChrDere01 48077235 48079492 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3340 01 48077235 48079492 Dere02g0621 02 5860773 5862567 CCT
Dere01g3340 01 48077235 48079492 Dere01g3340 01 48077235 48079492 ECH