Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3327 ATGGCGCACCGGAGGGAACCAGGATGTGGCATTGGTTCCTATGTGCTGGTCTTCATCTGTTTGATGCAGATACAATGTCATTTCCATGTGCTTGCTATGCTGGACCCTCTTGATTTCTTGGCTCTGCAGTCGGTTCGCAAGGCTCTCAAGGATATGCCGGGGTCGAATTTCTTTGCCTCTTGGGATTTTACTGCTGATCCGTGTAATTTCGCCGGCGTGTACTGTGATTCCGATAAGGTTGTCGCCCTCAATCTCGGCGATGCCAGAGCCGGTGCTCCCGGTCTAACGGGCAGGATAGACCCCGCAATCGGTAAGCTGTCTGCTCTCACCGAGTTCACAGTTGTGCCCGGTAGAATCTACGGTTCTCTGCCTCAGTCATTGTCTAATTTAAAGAACCTCAGATTCCTCGGCGTCAGCCGGAACTTCATTTCCGGCGACATTCCGGCGCACTTGGACCAGTTACGCAATCTCAGAACCCTTGATCTCAGCTACAATCAGCTCACCGGACACATTCCTCCATCCATCGGAGCCTTACCGGAGCTAAACAACCTGATCCTCTGCCACAACCATCTCTCCGGTTCGGTCCCCTCGTTTGCGTCACCCACCCTAACCCGGCTCGACCTGAAGCACAACTCTCTCACCGGTTCGCTTGCCCCCAATTCTCTCCCTCCGTCACTCCAATACCTCTCTCTATCCTGGAACAATCTCACCGGCCCAGTGGACCGGCTCTTGAACCGGATGCATCAGTTGAACTACCTCGACCTTAGCCTAAACCGGTTCACAGGCATCATTCCGGCTCGCATCTTCTCAGTTCCACTCGTCAATCTCCAATTGGAAAGGAACCAATTCTCCGGTCCGGTCCAACCAGTTGATCAGGTCACCATCCCAACCGTCGACCTTAGCCACAACGAGTTTTCAGGCGAAATATCACCCTTGTTTTCGACGGTGGAGAATCTATACCTCAACAACAACCGGTTCACGGGTCCGGTTCCGAGCAACTTCGTGGATGGGTTACTGGCGGCTAAGATACAGACACTGTATCTGCAGCACAACTATCTAACAGACATCGAGATTAGTCCAACGGCAGCGATTCCCGTAAGCAGCTCGTTGTGTCTTCAGTATAACTGCATGGTCCCGCCCATACAGACGCCGTGCCCCTTGAGGTCTGGGAAACAGATAACGAGGCCTACTGCACAATGCAACGAATGGAGAGGGTAA 1218 0.5296 MAHRREPGCGIGSYVLVFICLMQIQCHFHVLAMLDPLDFLALQSVRKALKDMPGSNFFASWDFTADPCNFAGVYCDSDKVVALNLGDARAGAPGLTGRIDPAIGKLSALTEFTVVPGRIYGSLPQSLSNLKNLRFLGVSRNFISGDIPAHLDQLRNLRTLDLSYNQLTGHIPPSIGALPELNNLILCHNHLSGSVPSFASPTLTRLDLKHNSLTGSLAPNSLPPSLQYLSLSWNNLTGPVDRLLNRMHQLNYLDLSLNRFTGIIPARIFSVPLVNLQLERNQFSGPVQPVDQVTIPTVDLSHNEFSGEISPLFSTVENLYLNNNRFTGPVPSNFVDGLLAAKIQTLYLQHNYLTDIEISPTAAIPVSSSLCLQYNCMVPPIQTPCPLRSGKQITRPTAQCNEWRG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3327 405 Gene3D Ribonuclease Inhibitor 38 199 IPR032675 -
Dere01g3327 405 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 17 405 - -
Dere01g3327 405 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Dere01g3327 405 Gene3D Ribonuclease Inhibitor 200 383 IPR032675 -
Dere01g3327 405 SMART LRR_typ_2 247 271 IPR003591 -
Dere01g3327 405 SMART LRR_typ_2 154 178 IPR003591 -
Dere01g3327 405 FunFam Nuclear pore complex protein NUP107 37 197 - -
Dere01g3327 405 Pfam Leucine Rich repeat 200 215 IPR001611 GO:0005515
Dere01g3327 405 Pfam Leucine Rich repeat 224 238 IPR001611 GO:0005515
Dere01g3327 405 SUPERFAMILY L domain-like 46 377 - -
Dere01g3327 405 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Dere01g3327 405 Pfam Leucine rich repeat 124 167 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3327 Dere-ChrDere01 47975764 47976981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3327 95 335 Receptor kinase-like Gene Family AT5G62230 30.116 3.32e-17 82.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3327 01 47975764 47976981 Dere02g0627 02 5913677 5914882 CCT
Dere01g3327 01 47975764 47976981 Dere01g3327 01 47975764 47976981 ECH