Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3318 ATGGCGGCTGCCCCAGCATCGCCGACGATCGATCGCGCTCCTCCGGTGGGGTCGGCAATGTTGCCGATGCAATTACCGCCCATGGTCGTCTCTGACTCCTTCGCCAAGGACGCCATCATTTCCTGGTTCCGCGGCGAGTTTGCGGCGGCCAACGCCATCATCGACTCCCTCTGCGGCCACCTGGCTCAGCTCGCCGACGCCTCCTCCGACTACGACTCGGTCTTTGCAGCAATTCATCGCCGGAGACTCAACTGGATCCCGGTGCTCCAGATGCAGAAGTATCACTCCATAGCTGACGTGGCCGTGGAACTCCGCAAAGTGGTGGAGAAGAAAACGGTGGTTAAGGAAACCGACGAGGGCGGGAAGAGGAGTGAGGATTCGGAGAGTGGATTGGACGAGAAGGAGAAAATTGAAGAGAAAGTGACGGAAAATAATGGAAATATTAGCGGCGGCGAAGGTGCTGAAGAGTATGAATCGCCTGACAGTGAAATTACTGATTCAGGATGCCAAGAAATGCAGGGGAGTTTGATGAACGTTACTATATGTTCAAACCATGAAGAATGTGAAGGGCGTTCTTCCCAGATAACGTTGACAAAAGGTTTCCAAGCAAAGGAGTCAGTGAAGGGGCATATGGTAAATGCTGTGAAAGGATTGAAGCTATATGAGAACATTTTCACCGATTCTGAACTCTGTAAGCTCACCGATTTTGTTAATGAGATTCATGCTGCTGGCCAGAATGGGGAACTTTCCGGTGAAGCTTTTATACTATTTAACAAGCACATGAAGGGAAACAAACGGGAGATGATTCAGCTGGGTGAACCAATTTTTGGACAGATAAAGGAGGATGCAAAAAGCAATATAGAGCCAATTCCATCTCTCCTCCAAGGTGTCATTGATCACCTTATCCAATGGCAACTACTTCCCGAGTATAGAAGGCCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGGGAACATTCTCAGCCATTCCTGAAACCACCGCACCTGGATCAACCTGTGTCCACTCTTCTTCTATCTGAATCAACTATGGCTTTTGGGCGCACCCTCATGAGCGAAAATGATGGGAACTACAAGGGGCCCCTCATGCTCTCATTGAAGAAGGGGTCCCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCGAGGCACGTAATGTGTCCATCCCCAAACAGAAGGGTCAGCATCACCTTCTTTAGAGTGAGGCCAGACTCCAGTCAATGCCAATCACCAACTCCTCCAACGACAAGTGCGATAACTTTTTGGCAACCTGGAATTTCTAGCTCATACGCTTTGCCAAATGGAGGTCTCGGTGGGAATGAGGCAACGGGGATGATGCCCAAGTGGGGAATTCTTCGTGCTCCAATGGTGATGCTTGCCCCTATGAGCCCTATGGCATTGAACCCTCGAAAACTTCCTCGTGGGGGAACTGGCGTGTTCTTGCCCTGGAATGTGCCATCCAGAAAACCTGCAAAGCATCTTCCACCACGTGCCCAAAGAGGGCGGTTTCTGGCATTGCCTTCCTCAGGTGAATCACACGTAGCAGACTCTTCTTCCGAACCCAGCAGTAGTGTTTGA 1596 0.5013 MAAAPASPTIDRAPPVGSAMLPMQLPPMVVSDSFAKDAIISWFRGEFAAANAIIDSLCGHLAQLADASSDYDSVFAAIHRRRLNWIPVLQMQKYHSIADVAVELRKVVEKKTVVKETDEGGKRSEDSESGLDEKEKIEEKVTENNGNISGGEGAEEYESPDSEITDSGCQEMQGSLMNVTICSNHEECEGRSSQITLTKGFQAKESVKGHMVNAVKGLKLYENIFTDSELCKLTDFVNEIHAAGQNGELSGEAFILFNKHMKGNKREMIQLGEPIFGQIKEDAKSNIEPIPSLLQGVIDHLIQWQLLPEYRRPNGCIINFFEEGEHSQPFLKPPHLDQPVSTLLLSESTMAFGRTLMSENDGNYKGPLMLSLKKGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSSQCQSPTPPTTSAITFWQPGISSSYALPNGGLGGNEATGMMPKWGILRAPMVMLAPMSPMALNPRKLPRGGTGVFLPWNVPSRKPAKHLPPRAQRGRFLALPSSGESHVADSSSEPSSSV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3318 531 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 312 409 IPR005123 -
Dere01g3318 531 Gene3D - 200 416 IPR037151 -
Dere01g3318 531 SUPERFAMILY Clavaminate synthase-like 208 408 - -
Dere01g3318 531 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 35 518 IPR044842 GO:0003729|GO:0006402|GO:0032451
Dere01g3318 531 MobiDBLite consensus disorder prediction 517 531 - -
Dere01g3318 531 MobiDBLite consensus disorder prediction 114 168 - -
Dere01g3318 531 Pfam 2OG-Fe(II) oxygenase superfamily 316 406 IPR044861 -
Dere01g3318 531 MobiDBLite consensus disorder prediction 114 142 - -
Dere01g3318 531 MobiDBLite consensus disorder prediction 492 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3318 Dere-ChrDere01 47919254 47923687 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3318 01 47919254 47923687 Dere02g0642 02 6016789 6024131 CCT
Dere01g3318 01 47919254 47923687 Dere01g3318 01 47919254 47923687 ECH