Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2908 ATGCGCGAAGCTCCGTCTCTGAGAGCACTCAAACATCAGAAGGTACCAGCACCCAAGCTGGCCATACAACTTGTGTTCGCTAGTCATGAATTTTTGTGGTCATTTCCAGAGAGTTTGCAGAAAATGGGTTCGGTAGAGAGATCAAAGAAGAAAGCTCACATATGGAAGAAAGCCATGATTCATTTTTCTCTCTGTTTTGTAATGGGGTTTTTCTCAGGCCTTGCTCCGACAGGAAAATCTTCAACCTATTCCACCCAAGTCGCTACCTCAAATACATCAGAATTCGCACCACAACTTATGCAGGTTCGGAACCAAACAACAAATGTCAACAAAAGTTCGATAGCCCCAGCGACGTCCAGAGTCCTCGAACGCACAAAGACTCTGCATGAAAAACCAGAGCCTGAGTTGAAACCTCGGAGACTTGTAATAATTGTGACTCCGACAAGCACTAAACTTCGCTTCCAAACGGTGTTTTTGAGGAAGTTGGCGAACACTTTAAAGCTGGTTCCTCAGCCATTGCTGTGGATTGTGGTGGAAGCTCAAACGGAGTCCACAGAAGTGTCGGAGATACTGAGGAAAACTGGGATTATGTATAGGCATTTGGTGTCCAAGGAGAACTTCACCGACTTGGAAGCAGAATTGAATTACCAGAGGAATCTTGCACTTAAGCACATTGAGCATCACAGGCTAAGCGGGATCCTACACTTTGCTGGGCTTTCCAATGTCTATGATCTCGAATTCTTCCACCACCTTAGAGATATTGAGATGTTTGGAACATGGCCAATGGCTCTGCTAAAAGCAAACAGGAAGAAAGTGAAAATCGAAGGACCAGTATGCGATTCTTCACAAGTCATAGGTTGGCATCTAGGAAACAAGAATAATGAGAAGGTTACAATGAGTCCTCGTATTCATATTTCAAGTTTTGCATTCAATAGTTCCATCCTCTGGGATCCTGAGAGATGGGGTCGTATTTCTTCAGTTCAAGACACCTCACAGAACTCCATCAAGTTCGTGAAGCAAGTAGTTCTGGAAGACGAGGCAAACCTGAAGGGACTTCCACCAAATGGTTGCTCCAAAATTTTGGTCTGGCGTTTTAATTTTCATGCCCGTACCACCATAAAACGTCAAGTTTTGACAGTTCCATCATAA 1149 0.4404 MREAPSLRALKHQKVPAPKLAIQLVFASHEFLWSFPESLQKMGSVERSKKKAHIWKKAMIHFSLCFVMGFFSGLAPTGKSSTYSTQVATSNTSEFAPQLMQVRNQTTNVNKSSIAPATSRVLERTKTLHEKPEPELKPRRLVIIVTPTSTKLRFQTVFLRKLANTLKLVPQPLLWIVVEAQTESTEVSEILRKTGIMYRHLVSKENFTDLEAELNYQRNLALKHIEHHRLSGILHFAGLSNVYDLEFFHHLRDIEMFGTWPMALLKANRKKVKIEGPVCDSSQVIGWHLGNKNNEKVTMSPRIHISSFAFNSSILWDPERWGRISSVQDTSQNSIKFVKQVVLEDEANLKGLPPNGCSKILVWRFNFHARTTIKRQVLTVPS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2908 382 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 140 379 IPR029044 -
Dere01g2908 382 FunFam Glycosyltransferases 140 379 - -
Dere01g2908 382 Pfam Glycosyltransferase family 43 162 366 IPR005027 GO:0015018|GO:0016020
Dere01g2908 382 CDD GlcAT-I 140 367 IPR005027 GO:0015018|GO:0016020
Dere01g2908 382 SUPERFAMILY Nucleotide-diphospho-sugar transferases 140 375 IPR029044 -
Dere01g2908 382 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 53 371 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2908 Dere-ChrDere01 43792492 43795330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2908 42 373 Glycosyltransferase AT2G37090 61.143 6.73e-147 418
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2908 01 43792492 43795330 Dere02g0978 02 9260537 9265253 CCT
Dere01g2908 01 43792492 43795330 Dere01g2908 01 43792492 43795330 ECH