Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2122 ATGGGCGCAAGTCGAAAGCTTCAGGGTGAGATAGATCGAGTTCTGAAGAAGGTCCAAGAAGGCGTTGAAGTCTTCGATAGTATCTGGAACAAGGTTTACGATACAGACAATGCAAACCAGAAGGAGAAATTTGAGGCAGACCTTAAGAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATTCAGTCTAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCTCTAGTGGATGCTCGCAAGCTCATTGAGCGTGAAATGGAAAGATTTAAGATCTGCGAAAAGGAAACTAAGACAAAAGCATTCTCCAAAGAAGGCTTGGGGCAACAGCCTAAAACTGATCCAAAGGAGAAGGCTAAATCAGAAACAAGAGATTGGTTGAACAATGTGGTTGGGGAGTTGGAATCTCAGATTGATAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAAAAAGGGAAGAACAGGCCACCTAGATTGACGCATCTTGAGACGTCAATCACTCGACACAAAGCTCATATAAAGAAATGTGAATTACTCTTGAGGCTACTAGATAACGATGAACTAAGTCCTGATCAGGTTAATGATGTCAAAGATTTCTTGGATGACTATGTGGAGCGTAATCAGGAAGACTTTGATGAATTCAGCGATGTTGATGAGCTATACAGTTCATTACCTTTAGACAAGGTGGAATCTCTAGAAGATCTTGTTACAATTGGTCCACCTGGTCTTTCTAAGGGTGCACTTGGTCTTAGTTTGAAGACTTCTTCGGCAGCATCAGCATCAGCATCAGCTTCACAAACATCTGAACAAGCTGATGACACAGCTTCCCAGGATAGCAACTCTGAAACTGTTGCCAGAACTCCACCTTCTAAAAGTAGTGGAATCAATTCTGCTACTTCAACACCTGCTGGGAACCATGCTACCCCTGTTTCTTTGAATGTTTCAGCTCATAACATGTCTGGTGCACCAGCTGCAGCATCAATCCTTCCTGGTTCAAGTACTGTTCGGAGTGGTTTGGAGAATACTAGTGCTGCTAATTCTTCATCTTCTGTAAATCAGTCTTCCTCTATAAAAGAAGAAGAGGTTAATGGCTTCCCTGGCCGGAGAGCATCTCCATCGCTCTCTGATGCTGCACATGTGAGAGGCATCAGTAGAAACAGCCTGCCAAATCAAGTAACATCTGGTATGCCTCTTGGTTCTGGCAACATTGTTTCCAGCAATGGGGCCCTTGGTTCAGTCCCTTCAGCCTCTGATATAACTAAGAGAAACATATTGGGAGCTGATGATAGGCTTGGAAGTAGTGGAATAGGGCAGCCTCTTCTATCTCCCCTAAGTAGTAGAATGATCTTGCCTCAGGCTGTGAAGGCTAACGATGGAACTGGCTCAGTTGACTCTAGTAATGTTAATGAGGCTGCAGCTGTGTCTGGGAGAGTTTTTTCCCCTTCTGGGGTTTCTAGCATGCAATGGAGACCTGGAAGCCCTTTCCAAAACCAGAATGAGACGGGGCAGCTTCGTGGGAGAACTGAAATAGCGCCTGATCAGAGAGAGAAATTTCTTCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCACAGTACCCTTCTTGGTATGCCTTCTCTTGCCGGTGGAAATCATAAGCAGTTTTCTGCCCCACAGCAAAACCCTCTCTTGCAGCAGGCACCAGGTCTCAGTAGTATCTCTTCTACCTCACTACAGCAGCCATCCAATTCTATCCTTTCTCCATCTAGCCAACAGCCATTGATATCAGGTGTTTCTAAAGATATTGATGTTGGCAATTCTAAAGGTGAAGAACTTCAGCAACAGCAGAGTTTTCCTGATGATTCAGTGACTGAATCTACTGCAAGTACTGGGCTTGGCAAGAATATCCTAAATGAAGATGATTTAAAATCCACATATTCTGTAGATTCTCCTCAGGCAGGAGCATCTGGCTCGCTTTCAGAGCCTGCTCAGAGCTCCAGAGATACTGATTTCTCTCCTGGCCAACCTTTACAGTCCAATCAACCTTCTGGTAACCTTGGTGTCATTGGAAGAAGAAGTGCTGCCGACCTGGGAGCCATTGGTGATAATTTTAGTGGAACAAGTGTTAATGCTGGTGGAGTACGTGATCAGTTATTTAATTTGCAGATGCTTGAGGCAGCTTACTACAAACTTCCACAACCGAAAGACTCAGAACGTCCAAGGACTTATACTCCTAGACACCCAACAATAACACCTCCTAGTTATCCTCAAGTACAGGCCCCCATTGTCAGTAATCCTGCTTTTTGGGAGAGAGTAGGGCTTGAACCTCTTGGCACTGATACACTGTTCTTTGCATTTTATTATCAACAGAATACCTATCAGCAATATCTGGCTGCTAAAGAACTAAAGAAGCAGTCTTGGAGATATCACAGAAAGTATAACACATGGTTTCAGCGACATGAAGAGCCCAAAGTTGCTACAGATGAATATGAACAGGGAACATATGTATACTTCGATTTTCATATTGCTAACGATGACCTGCAACATGGGTGGTGTCAAAGAATCAAGACCGAGTTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTATTGTATAG 2622 0.4378 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCELLLRLLDNDELSPDQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPGLSKGALGLSLKTSSAASASASASQTSEQADDTASQDSNSETVARTPPSKSSGINSATSTPAGNHATPVSLNVSAHNMSGAPAAASILPGSSTVRSGLENTSAANSSSSVNQSSSIKEEEVNGFPGRRASPSLSDAAHVRGISRNSLPNQVTSGMPLGSGNIVSSNGALGSVPSASDITKRNILGADDRLGSSGIGQPLLSPLSSRMILPQAVKANDGTGSVDSSNVNEAAAVSGRVFSPSGVSSMQWRPGSPFQNQNETGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLAGGNHKQFSAPQQNPLLQQAPGLSSISSTSLQQPSNSILSPSSQQPLISGVSKDIDVGNSKGEELQQQQSFPDDSVTESTASTGLGKNILNEDDLKSTYSVDSPQAGASGSLSEPAQSSRDTDFSPGQPLQSNQPSGNLGVIGRRSAADLGAIGDNFSGTSVNAGGVRDQLFNLQMLEAAYYKLPQPKDSERPRTYTPRHPTITPPSYPQVQAPIVSNPAFWERVGLEPLGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2122 873 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Dere01g2122 873 Gene3D - 713 868 IPR038635 -
Dere01g2122 873 PANTHER CCR4 NOT-RELATED 24 870 IPR040168 GO:0030015
Dere01g2122 873 PIRSF NOT_su_3_5 1 873 IPR012270 GO:0006355|GO:0030015
Dere01g2122 873 MobiDBLite consensus disorder prediction 565 690 - -
Dere01g2122 873 Coils Coil 41 61 - -
Dere01g2122 873 Coils Coil 132 159 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 609 688 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 110 131 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 490 513 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 345 369 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 345 386 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 565 598 - -
Dere01g2122 873 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 713 868 - -
Dere01g2122 873 MobiDBLite consensus disorder prediction 270 320 - -
Dere01g2122 873 Pfam NOT2 / NOT3 / NOT5 family 729 867 IPR007282 GO:0006355
Dere01g2122 873 MobiDBLite consensus disorder prediction 735 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2122 Dere-ChrDere01 35156275 35165073 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2122 01 35156275 35165073 Dere02g1698 02 16875919 16889793 CCT
Dere01g2122 01 35156275 35165073 Dere01g2122 01 35156275 35165073 ECH