Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02794 ATGGAAGCCGATACTGAGTACGAGGAAGGAGAGGCTTTCTTTTGTTACAAGgattatgatgatgatgatgaCAACATTGACCCCGATTCTCTCTCTTACATTGATGAGAGGATTCAGCATGTTCTGGGTCATTTTCGAAAGGATTTTGAAGGAGGTATTTCTGCTGAGCGTTTGGGTGCAAAATTTGGTGACTATGGCTCCTTTTTACCTACCTGTGAACGCCCTCCTCCTTTGCGATCTTGTCCAAAGACTCTACAAAAGGATAACAATTTGCCGAAATCTCCTAGGAGATCTAGCAATCTCCAAATGGCGGTTGCGTTTCTCAACTCAAAAGCACCTTCAAATATGCATCCTTCTATGAGGCTTGGAACAGCTTCCTGTAATGCTCATCCATTTCATAACTTAAGAGTACCTTCGGTTGATGATCCTGTAAAGAACACAGGAACTTCATCCAATAAAATAATAGAGAAGTGCACTGTGAAAGATGATTGTGTAAATAAGTCGGAAAATTTGACTGACCAAAGAACACTGAAGTTGCGAATCAAAGTGAAATCAGATATCTTAGCAAAAAAGAATGCTGAAATTTACAGTGGTCTAGGACTTGATGACTCTCCATCTTCCTCAATGGAGAACAGCCATGAAGAAAGTGAAGAAATGCCACATGTATCTCAAGAGACCCCTGAAGAATCTCCAACTAGAATTATTCAGGTTATGTCTTCCTTCACTATTCCTGGAGGTGTGCTAATATCACCTCTACATGACAGTATGCTGTACTTGATAAAAAAGGAAAAAGATCTTGGAGACAAAAGACACATTTTTTCTCTTAATGGTCATCAAGAACATTATTCCATGTCTACTGATGAATCAGATTCTTTTGTTGGGGAAGGACATTTGTTGAAGAAAAGGAAAGTGACGGTGGTGGACCAAAGTGAAAAAGTGCATATGAATGCTAACTTTTCTGAGAATGATATGAAGTTACATGTGAAGAAAAAGTTAGGAAATAGAACTCCAGATCGTAAGGATTTTCTATCTAATGACCTGAGAAGCACACCACTGTCAAGTTCAATTTGTGATGCTGGTGAAACTGCTGAAGTCACTGGTAAGGCTTTTGAAGTATCCAAGGAGGTCAATAAAGATGGTGTGAAATGTAGAGTGGTTTCCACTGAAGTAGTGAAGGAGGATTCCCTAGAGTCAATATCTGGTCAGGATTTTGACAAGTTTGAGAACAAAAATACAGGAAGTAGCTTTATGAAAGTTTTAGAGCATAAAATGGAAATTTCTCAGAATAATAATTCCACTGATCCTAAGAATAATAGCAAGGGTAAAGCTTTTGCTATTTCAAAAAGGGTTAAGTGTGATGAAGTGAAACACAAGGTGGATCAAGATACTCAAGTGTGTGAGAATAATCAGAAAGGAAAGGAAATATCTGAAAGCAAGAATGAGTTGCAAGGTGAACGGTGTTCTGGGAAACATATGACTTTTGCTGAAAAAGATAGCATTGTTACCAGTAATGATGCAATGATAAATGATAGGAAGAGAACTGGCACTGGTGTTATTTCTTCTAATAGTAAAATGCATAAAATAAAGTCACTGAAGGATAATAAGGTCAGAGCTCGTGACAAAGATTCATTGAAAGGGAAAAAATCAGAACGGATGGTTGATGGAGTAGATCCAACTGACTGGCCTCCCCTAAATAAGACTACAGGTAGTGCTAACCGTGATCATGTTGCAAAGAGTGCATATAGGGTTAAAGTAAAGGAAAGACCAACTGGCAATAAAGTAGTTAATCAGTTGTCAGCTTGGCCATGTGTAAAAGATGCTCCAGGTGCATTTCCTATTGCTGAAAATAAACCAACTTCTGATATGGTTGTGCCATCATCAGCAGCTGTACCTCAAGTTATCGAAGAAGATTGGGTATGCTGTGACCGTTGCCAGAAATGGAGGCTTTTACCTATGGGTTTAAAGCCAGACCAGCTTCCAGAGAAATGGTTGTGTAGCATGCTAGATTGGCTGCCCCGAATGAATCGGTGTAACATCAGTGAGGAGGAGACAACAAAAGCACTTTATGCTTTATATCAAATGCCGATTCCTGAGGGTCAAAATAACATGCAAAGCCATGCCACTGGACCTGAAACTGGAGTGACATCTGTTGATGCTCTGCAACTTGGCCTGAATCACCAAAAGTCCAGTTCTGATGTAATGTTTGATCTAGGAAAGAAGAAAAACAGTATGAATGAAAAAGCAAAGCCAGGAATCAATAATGACATGCATCAGTTGTCAAATACTGAAAAGAACAATGCTCAAGAGTCTGTGAAAAATAGAAACTTGAATGACATGAATCAGTGGCCTGCAGACTCAAATCGTACAAAGAAATCTAATTCTAAACATTTGATagaagagaaaaaaacagttaaggcaaaagaaaagcaaaggaaTGGAGGGGACAGAAACAATGCTAGATTGAAACGTAAGATGGGGGATAATCAACATGGATCTGGAACTCCTAAGAAATCTAAGACTGAAGATGTTTGTTATGCTGATAAACATCTGAATTCTGGCCTGGGATTTAAAAAGGTGGGTCTAAACTCAAGAAATGGTTTACCAACAAAGGCTACTGGAAAAAATATGAGGAAATATGGTGATTATGATTGTTCTACCAATCAAGAGGGCAAGTTGGTAGTTCCGGTAAAGAAAGGAGACTGGGCACAGTTTTCATCAGATGATGGTTCATTGGATGCTACAAACAGCAGCAAAAGTGGTTCAAAGAAGAAAAGGAAAATGCGTGACTGGATGGATAATGAGAAAAATAAGAAAACATTGTCGTTGGAAGATAATATGAAATGTGGTAAAGAGGGAAATATAAATCGGAGGGAGAAGAAGTATATAGTTTTGAATATGGAGGCAAAATCAGTAACTGAAAGTGATGATAAATTGAATAGAGAAAGTGGGATGAAGCAAGTTTTAATGTCAGACAGCAGGGACGAAATGGCTGTTGGAGCAGAGTTGAAAAGTGTTAATAAGGTCCAGCAGCAAAGAAAGCACAAAAAAAGTGTTGCTGCTAACCAAGCTTTGGATTATTTTGATCCATTGAGTAAGGATTTAGGCTCTGGACACTTTTCATTGGCAGCAACTTCAAGCTCTTCTAAGGTTTCAGGGTCTCACAGAGCTAAAACTAGCCTTGAAGATGTCAGGGGCTCCCCAGTAGAATCTGTTACCTCATCACCTTTGAGGACCTCCATCATGGACAAGCGTATTTTGGCAGCAGGGGACCTATCAGAAAAAGATGATGCTAGAAAAGATGGTCTACCAGTTAAGAGTTTGGATAACAGGGAGGGGAAGCTATCAGTAAGAACGAAGGAAAGAATTTCATATGACATACATCTTGCTCATGGTAATTGTGGCAGAGGTTCACATCATGAGGAAAAATTGAACAAGAGTAATCAGGAAAATGCACTTTCTTGGCAGAAATCTGGTAAGGTTACATCATTACGGGTCAAAGAAAAGGACAGAAATTCTGGTTCTGAGATTCGTAGGGATAAGATGGAGGTTTCAGCTTCAGATAATGATTTTTCAAAAAATGGTGTGAGTTATGAGTCAGCAGTTGATCCTAGTCATCATGCTTTTGGTACTGAGACAAGAAATGATGTTAAGAGCAGTTCTCTAAAGTCTAAACACAAGATTGACAACCTTACTAAGAAAAATTCTTCAAGGCATTTGTCCAATGAAGCTGGAAAACTAACTGAGCTAAAACAAAAAGCGGATGCTAGAACTAATAGAAAGATTATCTCCCAGCAGAATCTGATTCAGATCTTTGAGGAAGAAAACAAAGCTAATCCAGTATGCACTGGATCAAGAGATGGGAAAGCCAAAGTTATCTCATCTTCTGAGGGTAAAGTGAAAAGGGAAACATTATATGTGGATTCCAGAACTGCACCTGAGTTGCAAAATGTAGATATGTCTAATGGGCATCCAGTCCATGCATCTGGCCATGGTGAAGTTCCCAAGTTTGTTGGAAATCCAGTTGATGTTTGTTACAAGGTTGGAGTTAATCATAGTTCAGGAAGCTTTGTACCTGATGGACAGTTCAGTGAGTCAAGTCCTGTGACAACAAATTCTAGCCAAACTGCCTCTAGCATTCTGGAAGAAGCCACAAAGCTAAAAGATTCTGCAGATCATTATAAGAACTCTGGATTTGAGTTTGAAAGTAATGAGACTTATTTTAAAGCTGCCTTGAAGTTTCTGCACGGAGCTTCACTTCTAGAAAATTCTCACAGCGAGAGTAGAAAGTATGGAGAGATGAGTCAAATGCAAATATATGCTACTACTGCTAGACTTTTTGAATCTTGTGCCCATAAATATGAAAGACGTCAAGAAATGGCTGCAGCTGCTTTGGCATATAAATGCATGGAAGTGGTATACATGAGACTGGTTTACTGTAAACATTCTAGCATAAACAGGGATCGTCATGAGTTGCAATCAACCCTGCAAATGGTTTCTCAAGGTGAATCTCCTTCCTCTTCTGCATCTGATATTGATAATTTAAATAACCTGGTGGTAGTGGATAAGGCTACTTTGACAAGGGGTTCCAATACTCATGTCTCTAACAATCAAGTCATATCTGCTCGGAATTTCCCAAATATTGTCAGACTTCTTGATTTTACTCAAGACATAAGTTTTGCAATGGAGGCTTCTAGAAAATGCCAGAGCACTTTCATGGCTGCTAGTTTGAACATGGGAGAGGCACGGAATAGCGATTGCATAGCTTCTATTAGGAAGGTTGTTGATTTCAGTTTCCAAGATGTAGATGAGCTTGTACATCAGGTTTTGACTGCAACAAAAGCAATAACTCGTGCTGGTATCCTGAAAGGAAGTGGCTTAAGGATATCTACCTATGCTGGCACTAGGAAACCTGCAAAGAAGGCAGGCCACCCACAACATGTTACCCTTATAAAAGTTTTTATTGTGTCTCATTGGTACACACCCATATATTGGTCCTGCCAGCTTTTGGAATTGAAGTATTCCGATATACAGGTTAACTCTACAAGATAG 5049 0.3872 MEADTEYEEGEAFFCYKDYDDDDDNIDPDSLSYIDERIQHVLGHFRKDFEGGISAERLGAKFGDYGSFLPTCERPPPLRSCPKTLQKDNNLPKSPRRSSNLQMAVAFLNSKAPSNMHPSMRLGTASCNAHPFHNLRVPSVDDPVKNTGTSSNKIIEKCTVKDDCVNKSENLTDQRTLKLRIKVKSDILAKKNAEIYSGLGLDDSPSSSMENSHEESEEMPHVSQETPEESPTRIIQVMSSFTIPGGVLISPLHDSMLYLIKKEKDLGDKRHIFSLNGHQEHYSMSTDESDSFVGEGHLLKKRKVTVVDQSEKVHMNANFSENDMKLHVKKKLGNRTPDRKDFLSNDLRSTPLSSSICDAGETAEVTGKAFEVSKEVNKDGVKCRVVSTEVVKEDSLESISGQDFDKFENKNTGSSFMKVLEHKMEISQNNNSTDPKNNSKGKAFAISKRVKCDEVKHKVDQDTQVCENNQKGKEISESKNELQGERCSGKHMTFAEKDSIVTSNDAMINDRKRTGTGVISSNSKMHKIKSLKDNKVRARDKDSLKGKKSERMVDGVDPTDWPPLNKTTGSANRDHVAKSAYRVKVKERPTGNKVVNQLSAWPCVKDAPGAFPIAENKPTSDMVVPSSAAVPQVIEEDWVCCDRCQKWRLLPMGLKPDQLPEKWLCSMLDWLPRMNRCNISEEETTKALYALYQMPIPEGQNNMQSHATGPETGVTSVDALQLGLNHQKSSSDVMFDLGKKKNSMNEKAKPGINNDMHQLSNTEKNNAQESVKNRNLNDMNQWPADSNRTKKSNSKHLIEEKKTVKAKEKQRNGGDRNNARLKRKMGDNQHGSGTPKKSKTEDVCYADKHLNSGLGFKKVGLNSRNGLPTKATGKNMRKYGDYDCSTNQEGKLVVPVKKGDWAQFSSDDGSLDATNSSKSGSKKKRKMRDWMDNEKNKKTLSLEDNMKCGKEGNINRREKKYIVLNMEAKSVTESDDKLNRESGMKQVLMSDSRDEMAVGAELKSVNKVQQQRKHKKSVAANQALDYFDPLSKDLGSGHFSLAATSSSSKVSGSHRAKTSLEDVRGSPVESVTSSPLRTSIMDKRILAAGDLSEKDDARKDGLPVKSLDNREGKLSVRTKERISYDIHLAHGNCGRGSHHEEKLNKSNQENALSWQKSGKVTSLRVKEKDRNSGSEIRRDKMEVSASDNDFSKNGVSYESAVDPSHHAFGTETRNDVKSSSLKSKHKIDNLTKKNSSRHLSNEAGKLTELKQKADARTNRKIISQQNLIQIFEEENKANPVCTGSRDGKAKVISSSEGKVKRETLYVDSRTAPELQNVDMSNGHPVHASGHGEVPKFVGNPVDVCYKVGVNHSSGSFVPDGQFSESSPVTTNSSQTASSILEEATKLKDSADHYKNSGFEFESNETYFKAALKFLHGASLLENSHSESRKYGEMSQMQIYATTARLFESCAHKYERRQEMAAAALAYKCMEVVYMRLVYCKHSSINRDRHELQSTLQMVSQGESPSSSASDIDNLNNLVVVDKATLTRGSNTHVSNNQVISARNFPNIVRLLDFTQDISFAMEASRKCQSTFMAASLNMGEARNSDCIASIRKVVDFSFQDVDELVHQVLTATKAITRAGILKGSGLRISTYAGTRKPAKKAGHPQHVTLIKVFIVSHWYTPIYWSCQLLELKYSDIQVNSTR 1682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02794 1682 MobiDBLite consensus disorder prediction 532 576 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 1161 1186 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 1133 1227 - -
Cca11g02794 1682 ProSiteProfiles Zinc finger CW-type profile. 632 685 IPR011124 GO:0008270
Cca11g02794 1682 MobiDBLite consensus disorder prediction 1043 1075 - -
Cca11g02794 1682 Gene3D - 631 687 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 764 788 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 764 842 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 532 555 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 199 230 - -
Cca11g02794 1682 Pfam CW-type Zinc Finger 638 683 IPR011124 GO:0008270
Cca11g02794 1682 PANTHER CW-TYPE ZINC-FINGER PROTEIN 1 1619 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 903 932 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 1208 1227 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 789 842 - -
Cca11g02794 1682 MobiDBLite consensus disorder prediction 208 224 - -
Cca11g02794 1682 PANTHER CW-TYPE ZINC FINGER 1 1619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02794 Cca-Chr11 55288532 55296978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02794 - - ccaj:109807896 3174.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02794 11 55288532 55296978 Cca11g02794 11 55288532 55296978 ECH
Cca11g02794 11 55288532 55296978 Cca08g01650 08 48028155 48036501 PCT