Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02786 ATGGAGGAATCGAGCCAGCTGAAGCGTGCCATGATTGATTCCTGGGCTGGGGCAATTGCTGGTGGAATATCGCGCACAGTTACCTCGCCCCTCGATGTTATTAAGATTAGATTCCAGGTTCAGTTGGAGCCCACTTCTACATGGGCTGTACTACGCAAGGATTTGGCTGCAGCTGCGGCTGCATCATCCAAATACACTGGCATGTTTCAAGCAACCAAAGATATTCTTAGAGAAGAAGGTGTGCAGGGGTTTTGGCGGGGGAATGTACCAGCATTGCTCATGGTTATGCCATATACAGCTATTCAGTTTACAGTTTTGCACAAGTTTAAGACTTTTGCCTCCGGTTCTTCCAAGACAGAGAATCACGTTAATTTGAGCCCTTATCTATCCTACATCAGTGGGGCATTAGCTGGATGTGCAGCTACAGTTGGTTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCTCAGGGTGAACCAAAGGTCTATCCAAACATGAGGTCAGCACTACTTGATATCATTCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTGTCGCCAACTCTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACCTATGATACATTTAAGCGATGGTTGATGGATTGGAATCGTAGATACTCATATTCCAACACTGCTACAGCAGATAACCTCTCCAGCTTCCAGCTTTTCCTTTGTGGGTTGGCTGCTGGAACATGTGCCAAACTTGTTTGTCATCCGCTTGATGTCGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTCGAGCATCGTGCATATAGGAACATGTTTGATGCCATGCAACGGATAATGCGGTTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCTTATGAATTGACATCAGATTGGCTAGAGTCCACTTTTAGTTGA 1002 0.4541 MEESSQLKRAMIDSWAGAIAGGISRTVTSPLDVIKIRFQVQLEPTSTWAVLRKDLAAAAAASSKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKFKTFASGSSKTENHVNLSPYLSYISGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSALLDIIHTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWLMDWNRRYSYSNTATADNLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMQRIMRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02786 333 Gene3D Mitochondrial carrier domain 4 331 IPR023395 -
Cca11g02786 333 Pfam Mitochondrial carrier protein 230 329 IPR018108 -
Cca11g02786 333 Pfam Mitochondrial carrier protein 14 113 IPR018108 -
Cca11g02786 333 Pfam Mitochondrial carrier protein 126 214 IPR018108 -
Cca11g02786 333 SUPERFAMILY Mitochondrial carrier 8 322 IPR023395 -
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Cca11g02786 333 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cca11g02786 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
Cca11g02786 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Cca11g02786 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 327 IPR018108 -
Cca11g02786 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 3 332 - -
Cca11g02786 333 PANTHER SOLUTE CARRIER FAMILY 25 3 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02786 Cca-Chr11 55200559 55204430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02786 1 333 Organic Solute Cotransporters AT3G21390 74.107 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02786 K15108 - gmx:100784986 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02786 11 55200559 55204430 Cca11g02786 11 55200559 55204430 ECH
Cca11g02786 11 55200559 55204430 Cca08g01659 08 48277819 48282990 PCT