Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01659 ATGGAGGGGGAACCGAGCCAGCTCAGACGGGCCTTCGTTGATGCCTCCGCCGGAGCTATTTCCGGTGGAATTTCCAGGACAGTGACGTCACCTCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTGGAGCCCACATCTTCATGGACTTTACTACGCAAGGGTTTGTCTACACCTTCAAAGTATACTGGCATGTTACAAGCAGGCAAAGATATTTTTAGAGAAGAAGGCATACAGGGTTTTTGGCGGGGCAACGTACCAGCTTTGCTCATGGTTATGCCATATACAGCTATACAATTTACTGTTTTACATATGTTTAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACAATAGTTTGAGCCCTTATCTATCCTATGCGAGTGGAGCATTTGCTGGGTGTGCTGCAACTGTAGGGTCATATCCTTTTGATCTTCTCCGAACCATACTAGCTTCTCAGGGTGAACCAAAGGCATGGAATCGTCGTCAATATTCAAATCCTTCTGCAGAAAGCCTCTCTAGCTTTCAGCTATTCCTGTGTGGCTTGTCTGCAGGAACATGTGCCAAGCTCGTTTGTCATCCACTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGCTAGAACATCGTGCATACAAAAATATGTCTGATGCCATGAGACGAATATTACAGGCGGAGGGTTGGGCTGGTCTATATAAAGGGATTGTCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTAACATTTGTTGCATATGAATTGACATCAGATTGGTTGGAATCTATTTTAACTTGA 834 0.4448 MEGEPSQLRRAFVDASAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWTLLRKGLSTPSKYTGMLQAGKDIFREEGIQGFWRGNVPALLMVMPYTAIQFTVLHMFKTFASGSSKTENHNSLSPYLSYASGAFAGCAATVGSYPFDLLRTILASQGEPKAWNRRQYSNPSAESLSSFQLFLCGLSAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARLEHRAYKNMSDAMRRILQAEGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESILT 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01659 277 SUPERFAMILY Mitochondrial carrier 10 267 IPR023395 -
Cca08g01659 277 PANTHER SOLUTE CARRIER FAMILY 25 163 276 - -
Cca08g01659 277 PANTHER SOLUTE CARRIER FAMILY 25 4 159 - -
Cca08g01659 277 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Cca08g01659 277 Pfam Mitochondrial carrier protein 174 272 IPR018108 -
Cca08g01659 277 Pfam Mitochondrial carrier protein 12 110 IPR018108 -
Cca08g01659 277 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 163 276 - -
Cca08g01659 277 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 4 159 - -
Cca08g01659 277 Gene3D Mitochondrial carrier domain 6 166 IPR023395 -
Cca08g01659 277 Gene3D Mitochondrial carrier domain 167 275 IPR023395 -
Cca08g01659 277 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 271 IPR018108 -
Cca08g01659 277 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Cca08g01659 277 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Cca08g01659 277 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Cca08g01659 277 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01659 Cca-Chr8 48277819 48282990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01659 174 277 Organic Solute Cotransporters AT3G21390 78.846 1.35e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01659 K15108 - gmx:100803750 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01659 08 48277819 48282990 Cca08g01659 08 48277819 48282990 ECH
Cca11g02786 11 55200559 55204430 Cca08g01659 08 48277819 48282990 PCT