Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02780 ATGGATGCAAACTCTTCTGCTCAACAACTTGTTCCCTCAGAGCCATTGAAGTATCAGACATGGTTCTTGAAAGTTTCCATCCACTGTGAAGGTTGCAGGAGGAAAGTTAAGAAGGTTCTACAAAGCATTGATGGTGTTTTTACCACAGCGGTTGACCCGCAACAGCAGAAAGTAACGGTGACGGGAAGCGTGGGAGTTGAGACGCTGATAAGGAAGCTGGTCAAAGCCGGAAAACACGCCGAGATTTGGCCGGAGAATCCCGCCGGCGGGAGGGGAAAGAATACCTCCGGCAAAGACaagaagcagaagaataagaaggaagcagaGAGCGTGGAAAAAGGCAAGACCAAGACTGACGATGGAAAAAACAAGGGAAACGAGAAAAGTGCTGAAAAACGCAAcggcggcggcggcgaaagcgaggcggcggAGCAAAAGGGTGGGCAAAGTGAAGGAGGCAAGAAGAAGAAAAAGAAATGTCAGAATGGTGATGGTGATGGTGTTGGTGCACACAGGGGATCGCAGCCCCAGATGCAAATGAATCTGAGCCCTACACGTCAGCAATCATACTTATATCCAGAAGCTTACTGTTATCCCCCACTGGTGTATCTGGCAACACACAACAGGTTGAGTCCCATGGGAACAGTCGCTGCTCCTTCTTACTATGTTTCGCCATTCCCCTATGACCCTTATCATCATCATCGCCTTCCCTTCGAGATCTTCAGTGATGAGAATGCCAACGCTTGTTCCATTATGTGA 759 0.4453 MDANSSAQQLVPSEPLKYQTWFLKVSIHCEGCRRKVKKVLQSIDGVFTTAVDPQQQKVTVTGSVGVETLIRKLVKAGKHAEIWPENPAGGRGKNTSGKDKKQKNKKEAESVEKGKTKTDDGKNKGNEKSAEKRNGGGGESEAAEQKGGQSEGGKKKKKKCQNGDGDGVGAHRGSQPQMQMNLSPTRQQSYLYPEAYCYPPLVYLATHNRLSPMGTVAAPSYYVSPFPYDPYHHHRLPFEIFSDENANACSIM 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02780 252 MobiDBLite consensus disorder prediction 148 165 - -
Cca11g02780 252 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 6 252 - -
Cca11g02780 252 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 6 252 - -
Cca11g02780 252 SUPERFAMILY HMA, heavy metal-associated domain 17 84 IPR036163 GO:0046872
Cca11g02780 252 ProSiteProfiles Heavy-metal-associated domain profile. 26 82 IPR006121 GO:0046872
Cca11g02780 252 MobiDBLite consensus disorder prediction 81 180 - -
Cca11g02780 252 Gene3D - 17 82 - -
Cca11g02780 252 CDD HMA 23 81 IPR006121 GO:0046872
Cca11g02780 252 Pfam Heavy-metal-associated domain 25 79 IPR006121 GO:0046872
Cca11g02780 252 MobiDBLite consensus disorder prediction 94 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02780 Cca-Chr11 55148098 55149583 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02780 - - gmx:100808829 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02780 11 55148098 55149583 Cca11g02780 11 55148098 55149583 ECH
Cca11g02780 11 55148098 55149583 Cca08g01664 08 48350608 48352340 PCT