Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01664 ATGGATGCAAAACCTCCTCAACTTGCTTCACAACCTTTGAACTATCAGACATGGTTCTTGAAAGTTTCCATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAGCATTGACGGTGTTTTCACTGCAACCATAGATCAGCAGCAGCAGAAAGTAACTGTCACTGGAAGTGTTAGTGTTGAGACCCTTCTCAGGAAACTGGTCAGAGCCGGAAAACACGCCGAGATTTGGCCGGAGAGTCTCAACGGCGACGGAAAAATCTCCGGCAAAGGGGGGAACAAGAATAAGAAGAATGAAGCAAAAGAACCATTGAAAAACAAGGGAACTGAAAATGTTACTACTAGTAGTTCCAAGTGCAACAGTGAGAACAAGAGCAGCAACAAAAAAGCCGGCGACAACTCGCCGGAGAAGCCCCCCTCCGGTGTCCAGGCTCCGGCAGAGGGTGGTGGTGGTGGTTCTGGTAAGAAGAAAAAGAAAGTTCAGAGTGGTGGCAATGGTTTGAGTTCAGCCTCTACTGCTGCACCTGCACACACTGGAATGCAGTTTCAGGATCTTGTGGGCCAAGTGAATGAGACATGTCAACAACAATCATTTTCGTACCCAGAAACTGGTTATCCTCCGATGGTTTATGTCGCATCTTATAACAGATTTTATCCTTCTTACTATGTTCCATCTTCACCCTATGTGTATGCTGGTCTCCAAGATGGTTACCACTTTCAATCAGCACCGTTGGTTTCCTTTGAGATCTTTAGTGATGAAAATGCTAATGGCTGTTCCGTTATGTGA 795 0.4566 MDAKPPQLASQPLNYQTWFLKVSIHCEGCRRKVKKVLKSIDGVFTATIDQQQQKVTVTGSVSVETLLRKLVRAGKHAEIWPESLNGDGKISGKGGNKNKKNEAKEPLKNKGTENVTTSSSKCNSENKSSNKKAGDNSPEKPPSGVQAPAEGGGGGSGKKKKKVQSGGNGLSSASTAAPAHTGMQFQDLVGQVNETCQQQSFSYPETGYPPMVYVASYNRFYPSYYVPSSPYVYAGLQDGYHFQSAPLVSFEIFSDENANGCSVM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01664 264 ProSiteProfiles Heavy-metal-associated domain profile. 23 79 IPR006121 GO:0046872
Cca08g01664 264 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 10 264 - -
Cca08g01664 264 CDD HMA 20 78 IPR006121 GO:0046872
Cca08g01664 264 MobiDBLite consensus disorder prediction 82 177 - -
Cca08g01664 264 SUPERFAMILY HMA, heavy metal-associated domain 14 81 IPR036163 GO:0046872
Cca08g01664 264 Pfam Heavy-metal-associated domain 22 73 IPR006121 GO:0046872
Cca08g01664 264 MobiDBLite consensus disorder prediction 110 131 - -
Cca08g01664 264 Gene3D - 14 79 - -
Cca08g01664 264 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 10 264 - -
Cca08g01664 264 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01664 Cca-Chr8 48350608 48352340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01664 - - ccaj:109804519 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01664 08 48350608 48352340 Cca08g01664 08 48350608 48352340 ECH
Cca11g02780 11 55148098 55149583 Cca08g01664 08 48350608 48352340 PCT