Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02769 ATGGCTGTCGTAACCAGCACCGGCAAGCGCCGCCAACACTGGCTCTCCGTCAATCAAAACAATCCATCTCCCGATACGAAACGACCCAGACTGTCCACAATGTCGCAGAACCAGACTCGACCCGTGTTATCCTCGCGTAGCGTGCTCGCAAGAATTTCTCGGTACCCGGAGGTTAACTCAACTTTGCGCAGGGAGGTTCACGCCCCGTGTAGACCGCGTAAGTTTGACCTTCGCACCTTTTCTAGAACGGAATTGGGCGTGAGTGCTAGTGGTTATTCTCACAAAGAGGAGGTTATTAACGATGTGGGCTACGTGTTAAGTAAAAATTACCAGAGGGCGAAGAATTCTGCGTTGGGTACCATTAGGTTTGAGGATAAGGGCAAGGAGGTGATAGAATTGGATACTGATAGTCCCAAGGGCATGGTTTCGGAGGATTCGGGTGTGGAAGTGGTTCGTCCTGTGGAAGAAGATGGACGAGAAGTGCGCTCTGTGGCGACGGAGCATAAGTGGCAGGAAGGTGATTTGGTTGTGACTGAGATAAAGGATTTGCGTGCTAAGGATATTATGCAGGGTGGCCCTCAGCAGCAGTCAACTTCATCTGTGGTTTCTGAGTTGACTAATGGCAATTTGAATGTCGTTGATGCTTCCAAGATGTTGGAGACTCTGTCTTTAAGATCGGAGCTTGATCTGAGTGTTCAAGTCTACAAGAAGTTGCTCAGGGCTGTTGGGAAGCGAGATGATACGCTTAAGAGGCTGTCGTTTCAAATTCAAATTAATGAGACACGTAGGTCCACGTTTGAATTGTTGCGCCCGAAGAAGGAAGTAGTAGAGGAAGTGCCAGTGGAACCTTTTATTCCTCTTACTAAGGAAGAAGAAGCTGAGGTTGCACATGCCTTTTCTTCCAACAGGTGGAAGATCTTGGTTAACCATGAGAAATCTGGCATTGAGATTTCAGGGGAAAAGTTTCAGTGCCTTAGGCCGGGTGCATGGTTAAACGACGAGGTGATAAATTTGTACCTTGAGTTGTTGAAAGAGAGGGAGAGAAGAGAGCCGCAGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAGGTTAATAAGTGGCAAAAATGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAGATATTTGTACCTATCCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGAAAAGAAATTTCAGTTTCTGGACTCCCTGAGAGGAACAGATTCCCAAGTGATGAAAGTGCTGGCTAGCTATATTGTAGATGAAGTAAAAGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTCTATAGCAGAAACTTGGGGCTGTGTTTCAACCAGGAACACATGTCTTACTTCCGGCGCAGAACAGCCAAGGAAATCTTGAGATTAAAAGCAGACTAA 1554 0.4485 MAVVTSTGKRRQHWLSVNQNNPSPDTKRPRLSTMSQNQTRPVLSSRSVLARISRYPEVNSTLRREVHAPCRPRKFDLRTFSRTELGVSASGYSHKEEVINDVGYVLSKNYQRAKNSALGTIRFEDKGKEVIELDTDSPKGMVSEDSGVEVVRPVEEDGREVRSVATEHKWQEGDLVVTEIKDLRAKDIMQGGPQQQSTSSVVSELTNGNLNVVDASKMLETLSLRSELDLSVQVYKKLLRAVGKRDDTLKRLSFQIQINETRRSTFELLRPKKEVVEEVPVEPFIPLTKEEEAEVAHAFSSNRWKILVNHEKSGIEISGEKFQCLRPGAWLNDEVINLYLELLKERERREPQKFLNCHFFNTFFYKRLISGKNGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKEKKFQFLDSLRGTDSQVMKVLASYIVDEVKDKTGKDIDVSSWKKEFVEDLPEQQNGYDCGVFMIKYADFYSRNLGLCFNQEHMSYFRRRTAKEILRLKAD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02769 517 MobiDBLite consensus disorder prediction 1 41 - -
Cca11g02769 517 SUPERFAMILY Cysteine proteinases 283 515 IPR038765 -
Cca11g02769 517 Pfam Ulp1 protease family, C-terminal catalytic domain 330 511 IPR003653 GO:0006508|GO:0008234
Cca11g02769 517 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 516 - -
Cca11g02769 517 ProSiteProfiles Ubiquitin-like protease family profile. 315 487 IPR003653 GO:0006508|GO:0008234
Cca11g02769 517 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 516 - -
Cca11g02769 517 Gene3D Adenoviral Proteinase; Chain A 274 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02769 Cca-Chr11 55048306 55056972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02769 K08592 - gmx:100797013 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02769 11 55048306 55056972 Cca11g02769 11 55048306 55056972 ECH
Cca11g02769 11 55048306 55056972 Cca08g01672 08 48438764 48444853 PCT